1 Response_reg#1
6-116 aa · 111 aa · 53.4% of protein
Raw token
Response_reg:6:0.000000000000105:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS00245
Response regulator NarL family
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeNarLLength208 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000169235#DORFOR_RS00245Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length208 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 208 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa208 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
145-199 aa · 55 aa · 26.4% of protein
Raw token
HTH_LUXR:145:2.69e-21:199:55:58- Raw architecture: Response_reg:6:0.000000000000105:116:111:111#HTH_LUXR:145:2.69e-21:199:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000169235::NZ_AAXA02000003.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2999-3625Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_00054RefSeq proteinWP_005330199.1
Context group ID
GCF_000169235::NZ_AAXA02000003.1::G00047Context members
DORFOR_RS00245
Partner locus tags
DORFOR_RS00245
Partner old locus tags
DORFOR_00054
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005330199.1Primary protein accession used for annex mappings.
UniProt accessionB0G1F3Primary UniProt accession resolved in the annex database.
UniProt IDB0G1F3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS00245Primary locus identifier stored in the genes table.
Old locus tagDORFOR_00054Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000003.1Sequence record reported by the local genomic context database.
Genomic interval2 999-3 625 nt627 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 999-3 625 ntGCF_000169235::NZ_AAXA02000003.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000003.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000003.1All displayed genes belong to this local TCS context.
Neighborhood span2 999-3 625 nt627 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 999 nt3 625 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORFOR_RS00245GCF_000169235#DORFOR_RS00245
RRNarLCurrent focus
2 999-3 625 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS00245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2057042
Simplified PFAM architecture for RROC_2057042
PFAM domain coverage: 166 / 208 aa (79.8%)
1 aa208 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[145-198]
- Domain count: 2
- Matched identifier: RROC_2057042
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 145-198 ; GerE 145-198
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS00245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key