1 Response_reg#1
4-117 aa · 114 aa · 21.1% of protein
Raw token
Response_reg:4:1.01e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS05930
Response regulator, unclassified
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeunclassifiedLength540 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000169235#DORFOR_RS05930Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length540 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 540 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa540 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-486 aa · 43 aa · 8.0% of protein
Raw token
HTH_AraC:444:0.0000481:486:43:423 HTH_AraC#3
505-536 aa · 32 aa · 5.9% of protein
Raw token
HTH_AraC:505:0.00000284:536:32:42- Raw architecture: Response_reg:4:1.01e-29:117:114:111#HTH_AraC:444:0.0000481:486:43:42#HTH_AraC:505:0.00000284:536:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000169235::NZ_AAXA02000012.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span76139-77761Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_01288RefSeq proteinWP_005332260.1
Context group ID
GCF_000169235::NZ_AAXA02000012.1::G00027Context members
DORFOR_RS05930
Partner locus tags
DORFOR_RS05930
Partner old locus tags
DORFOR_01288
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005332260.1Primary protein accession used for annex mappings.
UniProt accessionB0G4U8Primary UniProt accession resolved in the annex database.
UniProt IDB0G4U8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS05930Primary locus identifier stored in the genes table.
Old locus tagDORFOR_01288Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000012.1Sequence record reported by the local genomic context database.
Genomic interval76 139-77 761 nt1 623 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span76 139-77 761 ntGCF_000169235::NZ_AAXA02000012.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000012.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000012.1All displayed genes belong to this local TCS context.
Neighborhood span76 139-77 761 nt1 623 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
76 139 nt77 761 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORFOR_RS05930GCF_000169235#DORFOR_RS05930
RRunclassifiedCurrent focus
76 139-77 761 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS05930The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0089355
Simplified PFAM architecture for RROC_0089355
PFAM domain coverage: 190 / 540 aa (35.2%)
1 aa540 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[460-536]
- Domain count: 2
- Matched identifier: RROC_0089355
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 460-536 ; HTH_18 460-536
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS05930
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key