1 HisKA#1
659-724 aa · 66 aa · 7.5% of protein
Raw token
HisKA:659:0.0000000000000297:724:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS04785
Histidine kinase, Classic
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeClassicLength880 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000169235#DORFOR_RS04785Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length880 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 880 aa (18.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa880 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
771-863 aa · 93 aa · 10.6% of protein
Raw token
HATPase_c:771:0.00000000000835:863:97:109- Raw architecture: HisKA:659:0.0000000000000297:724:66:64#HATPase_c:771:0.00000000000835:863:97:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000169235::NZ_AAXA02000011.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span55665-59054Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_01032RefSeq proteinWP_005331845.1
Context group ID
GCF_000169235::NZ_AAXA02000011.1::G00031Context members
DORFOR_RS04780DORFOR_RS04785
Partner locus tags
DORFOR_RS04780DORFOR_RS04785
Partner old locus tags
DORFOR_01031DORFOR_01032
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005331845.1Primary protein accession used for annex mappings.
UniProt accessionB0G455Primary UniProt accession resolved in the annex database.
UniProt IDB0G455_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS04785Primary locus identifier stored in the genes table.
Old locus tagDORFOR_01032Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000011.1Sequence record reported by the local genomic context database.
Genomic interval56 412-59 054 nt2 643 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 665-59 054 ntGCF_000169235::NZ_AAXA02000011.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000011.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000011.1All displayed genes belong to this local TCS context.
Neighborhood span55 665-59 054 nt3 390 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 665 nt59 054 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DORFOR_RS04780GCF_000169235#DORFOR_RS04780
RROmpR
55 665-56 360 nt · Forward (+)
DORFOR_RS04785GCF_000169235#DORFOR_RS04785
HKClassicCurrent focus
56 412-59 054 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS04785The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0446782
Simplified PFAM architecture for HKOC_0446782
PFAM domain coverage: 159 / 880 aa (18.1%)
1 aa880 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[659-724] | HATPase_c[771-863]
- Domain count: 2
- Matched identifier: HKOC_0446782
- Positioned domains: HisKA 659-724 ; HATPase_c 771-863
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key