1 Response_reg#1
6-81 aa · 76 aa · 59.8% of protein
Raw token
Response_reg:6:0.0000000321:81:77:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS01555
Response regulator, CheY family
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassRRTypeCheYLength127 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000169235#DORFOR_RS01555Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length127 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage76 / 127 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa127 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:0.0000000321:81:77:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000169235::NZ_AAXA02000007.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14889-15272Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_00343RefSeq proteinWP_040015252.1
Context group ID
GCF_000169235::NZ_AAXA02000007.1::G00039Context members
DORFOR_RS01555
Partner locus tags
DORFOR_RS01555
Partner old locus tags
DORFOR_00343
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_040015252.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS01555Primary locus identifier stored in the genes table.
Old locus tagDORFOR_00343Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000007.1Sequence record reported by the local genomic context database.
Genomic interval14 889-15 272 nt384 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 889-15 272 ntGCF_000169235::NZ_AAXA02000007.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000007.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000007.1All displayed genes belong to this local TCS context.
Neighborhood span14 889-15 272 nt384 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 889 nt15 272 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DORFOR_RS01555GCF_000169235#DORFOR_RS01555
RRCheYCurrent focus
14 889-15 272 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS01555The current gene is the representative for this cluster.
PFAM architectureNo PFAM architecture availablePFAM architecture is attached when the local PFAM databases provide a match.
PFAM architecture for RROC_2350429
No PFAM cluster architecture is available for the current selection on this server.
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS01555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key