1 HisKA#1
265-331 aa · 67 aa · 10.5% of protein
Raw token
HisKA:265:5.82e-18:331:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DORFOR_RS00745
Histidine kinase, Hybrid
Dorea formicigenerans ATCC 27755 · GCF_000169235
ClassHKTypeHybridLength640 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000169235#DORFOR_RS00745Stable P2CS identifier used across views.
GenomeGCF_000169235Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length640 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage293 / 640 aa (45.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa640 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
384-495 aa · 112 aa · 17.5% of protein
Raw token
HATPase_c:384:2.21e-29:495:112:1093 Response_reg#3
520-633 aa · 114 aa · 17.8% of protein
Raw token
Response_reg:520:7.74e-29:633:114:111- Raw architecture: HisKA:265:5.82e-18:331:67:64#HATPase_c:384:2.21e-29:495:112:109#Response_reg:520:7.74e-29:633:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000169235::NZ_AAXA02000005.1::G00043
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3535-9211Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDORFOR_00165RefSeq proteinWP_005330422.1
Context group ID
GCF_000169235::NZ_AAXA02000005.1::G00043Context members
DORFOR_RS16360DORFOR_RS00740DORFOR_RS00745
Partner locus tags
DORFOR_RS16360DORFOR_RS00740DORFOR_RS00745
Partner old locus tags
DORFOR_00163DORFOR_00164DORFOR_00165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005330422.1Primary protein accession used for annex mappings.
UniProt accessionB0G1U4Primary UniProt accession resolved in the annex database.
UniProt IDB0G1U4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDORFOR_RS00745Primary locus identifier stored in the genes table.
Old locus tagDORFOR_00165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AAXA02000005.1Sequence record reported by the local genomic context database.
Genomic interval7 289-9 211 nt1 923 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 535-9 211 ntGCF_000169235::NZ_AAXA02000005.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000169235::NZ_AAXA02000005.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AAXA02000005.1All displayed genes belong to this local TCS context.
Neighborhood span3 535-9 211 nt5 677 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 535 nt9 211 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
DORFOR_RS16360GCF_000169235#DORFOR_RS16360
RRunclassified
3 535-4 098 nt · Forward (+)
DORFOR_RS00740GCF_000169235#DORFOR_RS00740
HKHybrid
4 387-7 260 nt · Forward (+)
DORFOR_RS00745GCF_000169235#DORFOR_RS00745
HKHybridCurrent focus
7 289-9 211 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS00745The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0921069
Simplified PFAM architecture for HKOC_0921069
PFAM domain coverage: 295 / 640 aa (46.1%)
1 aa640 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[265-330] | HATPase_c[381-494] | Response_reg[520-634]
- Domain count: 3
- Matched identifier: HKOC_0921069
- Positioned domains: HisKA 265-330 ; HATPase_c 381-494 ; Response_reg 520-634
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS00745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 461 · GCF_000169235
AssemblyASM16923v1 · Contighaploid
Genome composition3 186 031 bp · 41,0% GCDorea formicigenerans ATCC 27755
Signal transduction countsGenes 84 · HK 44 · RR 39CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key