1 Response_reg#1
4-119 aa · 116 aa · 24.2% of protein
Raw token
Response_reg:4:6.26e-25:119:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS24520
Response regulator, unclassified
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeunclassifiedLength480 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160095#CLOSTHATH_RS24520Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length480 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 480 aa (39.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa480 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
384-424 aa · 41 aa · 8.5% of protein
Raw token
HTH_AraC:384:0.0000000334:424:41:423 HTH_AraC#3
442-475 aa · 34 aa · 7.1% of protein
Raw token
HTH_AraC:442:0.00000000377:475:34:42- Raw architecture: Response_reg:4:6.26e-25:119:116:111#HTH_AraC:384:0.0000000334:424:41:42#HTH_AraC:442:0.00000000377:475:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160095::NZ_GG667758.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2761-4203Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_05532RefSeq proteinWP_039892804.1
Context group ID
GCF_000160095::NZ_GG667758.1::G00039Context members
CLOSTHATH_RS24520
Partner locus tags
CLOSTHATH_RS24520
Partner old locus tags
CLOSTHATH_05532
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039892804.1Primary protein accession used for annex mappings.
UniProt accessionA0AA37JJC6Primary UniProt accession resolved in the annex database.
UniProt IDA0AA37JJC6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS24520Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_05532Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667758.1Sequence record reported by the local genomic context database.
Genomic interval2 761-4 203 nt1 443 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 761-4 203 ntGCF_000160095::NZ_GG667758.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667758.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667758.1All displayed genes belong to this local TCS context.
Neighborhood span2 761-4 203 nt1 443 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 761 nt4 203 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOSTHATH_RS24520GCF_000160095#CLOSTHATH_RS24520
RRunclassifiedCurrent focus
2 761-4 203 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS24520The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0182701
Simplified PFAM architecture for RROC_0182701
PFAM domain coverage: 192 / 480 aa (40.0%)
1 aa480 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-117] | HTH_AraC[384-424] | HTH_AraC[439-475]
- Domain count: 3
- Matched identifier: RROC_0182701
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; HTH_AraC 384-424 ; HTH_AraC 384-424 ; HTH_AraC 439-475 ; HTH_AraC 439-475
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS24520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key