1 Response_reg#1
17-126 aa · 110 aa · 40.9% of protein
Raw token
Response_reg:17:1.92e-28:126:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS16685
Response regulator, unclassified
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeunclassifiedLength269 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160095#CLOSTHATH_RS16685Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 269 aa (69.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
175-214 aa · 40 aa · 14.9% of protein
Raw token
HTH_AraC:175:0.00000318:214:40:423 HTH_AraC#3
228-264 aa · 37 aa · 13.8% of protein
Raw token
HTH_AraC:228:0.000055:264:37:42- Raw architecture: Response_reg:17:1.92e-28:126:110:111#HTH_AraC:175:0.00000318:214:40:42#HTH_AraC:228:0.000055:264:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160095::NZ_GG667677.1::G00082
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span12479-13288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_03764RefSeq proteinWP_006774231.1
Context group ID
GCF_000160095::NZ_GG667677.1::G00082Context members
CLOSTHATH_RS16685
Partner locus tags
CLOSTHATH_RS16685
Partner old locus tags
CLOSTHATH_03764
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006774231.1Primary protein accession used for annex mappings.
UniProt accessionA0A174TZA6Primary UniProt accession resolved in the annex database.
UniProt IDA0A174TZA6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS16685Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_03764Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667677.1Sequence record reported by the local genomic context database.
Genomic interval12 479-13 288 nt810 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 479-13 288 ntGCF_000160095::NZ_GG667677.1::G00082
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667677.1::G00082Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667677.1All displayed genes belong to this local TCS context.
Neighborhood span12 479-13 288 nt810 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 479 nt13 288 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOSTHATH_RS16685GCF_000160095#CLOSTHATH_RS16685
RRunclassifiedCurrent focus
12 479-13 288 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS16685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0616890
Simplified PFAM architecture for RROC_0616890
PFAM domain coverage: 188 / 269 aa (69.9%)
1 aa269 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[17-127] | HTH_18[188-264]
- Domain count: 2
- Matched identifier: RROC_0616890
- Positioned domains: Response_reg 17-127 ; Response_reg 17-127 ; HTH_18 188-264 ; HTH_18 188-264
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS16685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key