1 Response_reg#1
9-77 aa · 69 aa · 33.3% of protein
Raw token
Response_reg:9:1.29e-27:77:69:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS15895
Response regulator, unclassified
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeunclassifiedLength207 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160095#CLOSTHATH_RS15895Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage101 / 207 aa (48.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
172-203 aa · 32 aa · 15.5% of protein
Raw token
HTH_AraC:172:0.0000000513:203:32:42- Raw architecture: Response_reg:9:1.29e-27:77:69:111#HTH_AraC:172:0.0000000513:203:32:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160095::NZ_GG667671.1::G00085
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10195-10819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_03580RefSeq proteinWP_080552286.1
Context group ID
GCF_000160095::NZ_GG667671.1::G00085Context members
CLOSTHATH_RS15895
Partner locus tags
CLOSTHATH_RS15895
Partner old locus tags
CLOSTHATH_03580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_080552286.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS15895Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_03580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667671.1Sequence record reported by the local genomic context database.
Genomic interval10 195-10 819 nt625 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 195-10 819 ntGCF_000160095::NZ_GG667671.1::G00085
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667671.1::G00085Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667671.1All displayed genes belong to this local TCS context.
Neighborhood span10 195-10 819 nt625 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 195 nt10 819 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOSTHATH_RS15895GCF_000160095#CLOSTHATH_RS15895
RRunclassifiedCurrent focus
10 195-10 819 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000433395#Q7A43_RS23465Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0756996
Simplified PFAM architecture for RROC_0756996
PFAM domain coverage: 191 / 247 aa (77.3%)
1 aa247 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-116] | HTH_18[167-244]
- Domain count: 2
- Matched identifier: RROC_0756996
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; HTH_18 167-244 ; HTH_18 167-244
Cluster members and taxonomy
Representative gene: GCF_000433395#Q7A43_RS23465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key