1 Response_reg#1
5-63 aa · 59 aa · 93.7% of protein
Raw token
Response_reg:5:0.0000000000016:63:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS10000
Response regulator, CheY family
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeCheYLength63 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160095#CLOSTHATH_RS10000Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length63 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage59 / 63 aa (93.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa63 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.0000000000016:63:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160095::NZ_GG667638.1::G00098
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56-2105Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_02258RefSeq proteinWP_006772780.1
Context group ID
GCF_000160095::NZ_GG667638.1::G00098Context members
CLOSTHATH_RS09995CLOSTHATH_RS10000
Partner locus tags
CLOSTHATH_RS09995CLOSTHATH_RS10000
Partner old locus tags
CLOSTHATH_02257CLOSTHATH_02258
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006772780.1Primary protein accession used for annex mappings.
UniProt accessionD3AF74Primary UniProt accession resolved in the annex database.
UniProt IDD3AF74_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS10000Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_02258Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667638.1Sequence record reported by the local genomic context database.
Genomic interval1 918-2 105 nt188 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56-2 105 ntGCF_000160095::NZ_GG667638.1::G00098
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667638.1::G00098Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667638.1All displayed genes belong to this local TCS context.
Neighborhood span56-2 105 nt2 050 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 nt2 105 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOSTHATH_RS09995GCF_000160095#CLOSTHATH_RS09995
HKClassic
56-1 921 nt · Forward (+)
CLOSTHATH_RS10000GCF_000160095#CLOSTHATH_RS10000
RRCheYCurrent focus
1 918-2 105 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003468235#DW876_RS15565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0101058
Simplified PFAM architecture for RROC_0101058
PFAM domain coverage: 321 / 535 aa (60.0%)
1 aa535 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[5-118] | GGDEF_2[160-288] | HTH_18[448-525]
- Domain count: 3
- Matched identifier: RROC_0101058
- Positioned domains: Response_reg 5-118 ; Response_reg 5-118 ; GGDEF_2 160-288 ; GGDEF_2 160-288 ; HTH_18 448-525 ; HTH_18 448-525
Cluster members and taxonomy
Representative gene: GCF_003468235#DW876_RS15565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key