1 Response_reg#1
4-113 aa · 110 aa · 46.2% of protein
Raw token
Response_reg:4:3.24e-24:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS03105
Response regulator, unclassified
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeunclassifiedLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160095#CLOSTHATH_RS03105Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 238 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
148-189 aa · 42 aa · 17.6% of protein
Raw token
HTH_AraC:148:0.0000000149:189:42:423 HTH_AraC#3
201-235 aa · 35 aa · 14.7% of protein
Raw token
HTH_AraC:201:0.0000000816:235:35:42- Raw architecture: Response_reg:4:3.24e-24:113:110:111#HTH_AraC:148:0.0000000149:189:42:42#HTH_AraC:201:0.0000000816:235:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160095::NZ_GG667612.1::G00124
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span86552-88967Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00716RefSeq proteinWP_006771275.1
Context group ID
GCF_000160095::NZ_GG667612.1::G00124Context members
CLOSTHATH_RS03100CLOSTHATH_RS03105
Partner locus tags
CLOSTHATH_RS03100CLOSTHATH_RS03105
Partner old locus tags
CLOSTHATH_00715CLOSTHATH_00716
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006771275.1Primary protein accession used for annex mappings.
UniProt accessionA0A413WWB6Primary UniProt accession resolved in the annex database.
UniProt IDA0A413WWB6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS03105Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00716Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667612.1Sequence record reported by the local genomic context database.
Genomic interval88 251-88 967 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span86 552-88 967 ntGCF_000160095::NZ_GG667612.1::G00124
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667612.1::G00124Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667612.1All displayed genes belong to this local TCS context.
Neighborhood span86 552-88 967 nt2 416 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 552 nt88 967 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOSTHATH_RS03100GCF_000160095#CLOSTHATH_RS03100
HKClassic
86 552-88 273 nt · Forward (+)
CLOSTHATH_RS03105GCF_000160095#CLOSTHATH_RS03105
RRunclassifiedCurrent focus
88 251-88 967 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS03105The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932579
Simplified PFAM architecture for RROC_0932579
PFAM domain coverage: 185 / 238 aa (77.7%)
1 aa238 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[162-235]
- Domain count: 2
- Matched identifier: RROC_0932579
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 162-235 ; HTH_18 162-235
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS03105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key