1 Response_reg#1
10-120 aa · 111 aa · 21.1% of protein
Raw token
Response_reg:10:2.81e-32:120:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS01700
Response regulator, unclassified
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160095#CLOSTHATH_RS01700Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage188 / 527 aa (35.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
423-464 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:423:0.00000000236:464:42:423 HTH_AraC#3
479-513 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:479:0.000000424:513:35:42- Raw architecture: Response_reg:10:2.81e-32:120:111:111#HTH_AraC:423:0.00000000236:464:42:42#HTH_AraC:479:0.000000424:513:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160095::NZ_GG667609.1::G00133
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73655-77175Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00400RefSeq proteinWP_006770956.1
Context group ID
GCF_000160095::NZ_GG667609.1::G00133Context members
CLOSTHATH_RS01700CLOSTHATH_RS01705
Partner locus tags
CLOSTHATH_RS01700CLOSTHATH_RS01705
Partner old locus tags
CLOSTHATH_00400CLOSTHATH_00401
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006770956.1Primary protein accession used for annex mappings.
UniProt accessionD3A9X9Primary UniProt accession resolved in the annex database.
UniProt IDD3A9X9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS01700Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667609.1Sequence record reported by the local genomic context database.
Genomic interval73 655-75 238 nt1 584 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 655-77 175 ntGCF_000160095::NZ_GG667609.1::G00133
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667609.1::G00133Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667609.1All displayed genes belong to this local TCS context.
Neighborhood span73 655-77 175 nt3 521 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 655 nt77 175 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOSTHATH_RS01700GCF_000160095#CLOSTHATH_RS01700
RRunclassifiedCurrent focus
73 655-75 238 nt · Reverse (-)
CLOSTHATH_RS01705GCF_000160095#CLOSTHATH_RS01705
HKClassic
75 259-77 175 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS01700The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0115837
Simplified PFAM architecture for RROC_0115837
PFAM domain coverage: 311 / 527 aa (59.0%)
1 aa527 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[10-120] | GGDEF_2[160-280] | HTH_18[436-514]
- Domain count: 3
- Matched identifier: RROC_0115837
- Positioned domains: Response_reg 10-120 ; Response_reg 10-120 ; GGDEF_2 160-280 ; GGDEF_2 160-280 ; HTH_18 436-514 ; HTH_18 436-514
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS01700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key