1 dCache_1#1
55-275 aa · 221 aa · 37.8% of protein
Raw token
dCache_1:55:0.00000000000000461:275:233:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS01195
Histidine kinase, Classic
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000160095#CLOSTHATH_RS01195Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage465 / 585 aa (79.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation4 items
2 HAMP#2
292-359 aa · 68 aa · 11.6% of protein
Raw token
HAMP:292:0.00000000692:359:71:693 His_kinase#3
375-454 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:375:2.96e-35:454:80:804 HATPase_c#4
473-568 aa · 96 aa · 16.4% of protein
Raw token
HATPase_c:473:0.0000000395:568:105:109- Raw architecture: dCache_1:55:0.00000000000000461:275:233:195#HAMP:292:0.00000000692:359:71:69#His_kinase:375:2.96e-35:454:80:80#HATPase_c:473:0.0000000395:568:105:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000160095::NZ_GG667608.1::G00134
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span103717-106237Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00283RefSeq proteinWP_006770840.1
Context group ID
GCF_000160095::NZ_GG667608.1::G00134Context members
CLOSTHATH_RS01195CLOSTHATH_RS01200
Partner locus tags
CLOSTHATH_RS01195CLOSTHATH_RS01200
Partner old locus tags
CLOSTHATH_00283CLOSTHATH_00284
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006770840.1Primary protein accession used for annex mappings.
UniProt accessionD3A9L2Primary UniProt accession resolved in the annex database.
UniProt IDD3A9L2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS01195Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00283Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667608.1Sequence record reported by the local genomic context database.
Genomic interval103 717-105 474 nt1 758 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 717-106 237 ntGCF_000160095::NZ_GG667608.1::G00134
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667608.1::G00134Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667608.1All displayed genes belong to this local TCS context.
Neighborhood span103 717-106 237 nt2 521 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 717 nt106 237 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLOSTHATH_RS01195GCF_000160095#CLOSTHATH_RS01195
HKClassicCurrent focus
103 717-105 474 nt · Reverse (-)
CLOSTHATH_RS01200GCF_000160095#CLOSTHATH_RS01200
RRunclassified
105 458-106 237 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS01195The current gene is the representative for this cluster.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1136173
Simplified PFAM architecture for HKOC_1136173
PFAM domain coverage: 401 / 585 aa (68.5%)
1 aa585 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[50-274] | His_kinase[375-454] | HATPase_c[473-568]
- Domain count: 3
- Matched identifier: HKOC_1136173
- Positioned domains: dCache_1 50-274 ; His_kinase 375-454 ; HATPase_c 473-568
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS01195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key