1 Response_reg#1
4-114 aa · 111 aa · 46.1% of protein
Raw token
Response_reg:4:7.78e-19:114:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLOSTHATH_RS00680
Response regulator LytTR family
Hungatella hathewayi DSM 13479 · GCF_000160095
ClassRRTypeLytTRLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000160095#CLOSTHATH_RS00680Stable P2CS identifier used across views.
GenomeGCF_000160095Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage204 / 241 aa (84.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-228 aa · 93 aa · 38.6% of protein
Raw token
LytTR:136:6.17e-20:228:98:98- Raw architecture: Response_reg:4:7.78e-19:114:117:111#LytTR:136:6.17e-20:228:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000160095::NZ_GG667607.1::G00139
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span157928-158653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLOSTHATH_00159RefSeq proteinWP_006770725.1
Context group ID
GCF_000160095::NZ_GG667607.1::G00139Context members
CLOSTHATH_RS00680
Partner locus tags
CLOSTHATH_RS00680
Partner old locus tags
CLOSTHATH_00159
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006770725.1Primary protein accession used for annex mappings.
UniProt accessionA0A413WTI7Primary UniProt accession resolved in the annex database.
UniProt IDA0A413WTI7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLOSTHATH_RS00680Primary locus identifier stored in the genes table.
Old locus tagCLOSTHATH_00159Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG667607.1Sequence record reported by the local genomic context database.
Genomic interval157 928-158 653 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 928-158 653 ntGCF_000160095::NZ_GG667607.1::G00139
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000160095::NZ_GG667607.1::G00139Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG667607.1All displayed genes belong to this local TCS context.
Neighborhood span157 928-158 653 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 928 nt158 653 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLOSTHATH_RS00680GCF_000160095#CLOSTHATH_RS00680
RRLytTRCurrent focus
157 928-158 653 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160095#CLOSTHATH_RS00680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862806
Simplified PFAM architecture for RROC_0862806
PFAM domain coverage: 202 / 241 aa (83.8%)
1 aa241 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-114] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0862806
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_000160095#CLOSTHATH_RS00680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 566 550 · GCF_000160095
AssemblyASM16009v1 · Scaffoldhaploid
Genome composition7 163 884 bp · 48,0% GCHungatella hathewayi DSM 13479
Signal transduction countsGenes 227 · HK 106 · RR 114CheA 0 · PP 7
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key