1 His_kinase#1
396-476 aa · 81 aa · 13.7% of protein
Raw token
His_kinase:396:8.01e-21:476:82:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS12375
Histidine kinase, Classic
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeClassicLength590 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS12375Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length590 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 590 aa (28.6%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa590 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
497-584 aa · 88 aa · 14.9% of protein
Raw token
HATPase_c:497:0.0000000000665:584:100:109- Raw architecture: His_kinase:396:8.01e-21:476:82:80#HATPase_c:497:0.0000000000665:584:100:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663519.1::G00030
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span44019-45791Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00072RefSeq proteinWP_005600635.1
Context group ID
GCF_000156015::NZ_GG663519.1::G00030Context members
BUTYVIB_RS12375
Partner locus tags
BUTYVIB_RS12375
Partner old locus tags
BUTYVIB_00072
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005600635.1Primary protein accession used for annex mappings.
UniProt accessionD4RWN6Primary UniProt accession resolved in the annex database.
UniProt IDD4RWN6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS12375Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663519.1Sequence record reported by the local genomic context database.
Genomic interval44 019-45 791 nt1 773 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span44 019-45 791 ntGCF_000156015::NZ_GG663519.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663519.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663519.1All displayed genes belong to this local TCS context.
Neighborhood span44 019-45 791 nt1 773 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 019 nt45 791 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS12375GCF_000156015#BUTYVIB_RS12375
HKClassicCurrent focus
44 019-45 791 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS12375The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1110144
Simplified PFAM architecture for HKOC_1110144
PFAM domain coverage: 170 / 590 aa (28.8%)
1 aa590 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[397-474] | HATPase_c[494-585]
- Domain count: 2
- Matched identifier: HKOC_1110144
- Positioned domains: His_kinase 397-474 ; HATPase_c 494-585
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS12375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key