1 dCache_1#1
42-265 aa · 224 aa · 39.4% of protein
Raw token
dCache_1:42:0.0000806:265:235:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS01120
Histidine kinase, Classic
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassHKTypeClassicLength568 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS01120Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length568 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage468 / 568 aa (82.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa568 aa
Domain-by-domain annotation4 items
2 HAMP#2
286-348 aa · 63 aa · 11.1% of protein
Raw token
HAMP:286:0.00000000258:348:63:693 His_kinase#3
370-448 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:370:7.54e-27:448:79:804 HATPase_c#4
467-568 aa · 102 aa · 18.0% of protein
Raw token
HATPase_c:467:0.00000000000255:568:111:109- Raw architecture: dCache_1:42:0.0000806:265:235:195#HAMP:286:0.00000000258:348:63:69#His_kinase:370:7.54e-27:448:79:80#HATPase_c:467:0.00000000000255:568:111:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663519.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191536-194759Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00230RefSeq proteinWP_005600904.1
Context group ID
GCF_000156015::NZ_GG663519.1::G00032Context members
BUTYVIB_RS01120BUTYVIB_RS01125
Partner locus tags
BUTYVIB_RS01120BUTYVIB_RS01125
Partner old locus tags
BUTYVIB_00230BUTYVIB_00231
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005600904.1Primary protein accession used for annex mappings.
UniProt accessionD4RW99Primary UniProt accession resolved in the annex database.
UniProt IDD4RW99_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS01120Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663519.1Sequence record reported by the local genomic context database.
Genomic interval191 536-193 242 nt1 707 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191 536-194 759 ntGCF_000156015::NZ_GG663519.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663519.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663519.1All displayed genes belong to this local TCS context.
Neighborhood span191 536-194 759 nt3 224 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 536 nt194 759 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS01120GCF_000156015#BUTYVIB_RS01120
HKClassicCurrent focus
191 536-193 242 nt · Reverse (-)
BUTYVIB_RS01125GCF_000156015#BUTYVIB_RS01125
RRunclassified
193 245-194 759 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS01120The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1220373
Simplified PFAM architecture for HKOC_1220373
PFAM domain coverage: 220 / 568 aa (38.7%)
1 aa568 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[306-348] | His_kinase[370-445] | HATPase_c[467-567]
- Domain count: 3
- Matched identifier: HKOC_1220373
- Positioned domains: HAMP 306-348 ; His_kinase 370-445 ; HATPase_c 467-567
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS01120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key