1 Response_reg#1
6-119 aa · 114 aa · 52.5% of protein
Raw token
Response_reg:6:0.000000000000201:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS02450
Response regulator NarL family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS02450Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 217 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
143-199 aa · 57 aa · 26.3% of protein
Raw token
HTH_LUXR:143:1.02e-18:199:57:58- Raw architecture: Response_reg:6:0.000000000000201:119:114:111#HTH_LUXR:143:1.02e-18:199:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663520.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span84579-85232Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_00502RefSeq proteinWP_005601386.1
Context group ID
GCF_000156015::NZ_GG663520.1::G00025Context members
BUTYVIB_RS02450
Partner locus tags
BUTYVIB_RS02450
Partner old locus tags
BUTYVIB_00502
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005601386.1Primary protein accession used for annex mappings.
UniProt accessionD4RXF1Primary UniProt accession resolved in the annex database.
UniProt IDD4RXF1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS02450Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_00502Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663520.1Sequence record reported by the local genomic context database.
Genomic interval84 579-85 232 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 579-85 232 ntGCF_000156015::NZ_GG663520.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663520.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663520.1All displayed genes belong to this local TCS context.
Neighborhood span84 579-85 232 nt654 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 579 nt85 232 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS02450GCF_000156015#BUTYVIB_RS02450
RRNarLCurrent focus
84 579-85 232 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS02450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847682
Simplified PFAM architecture for RROC_1847682
PFAM domain coverage: 166 / 217 aa (76.5%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-118] | GerE[145-197]
- Domain count: 2
- Matched identifier: RROC_1847682
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; GerE 145-197 ; GerE 145-197
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS02450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key