1 Response_reg#1
7-121 aa · 115 aa · 44.2% of protein
Raw token
Response_reg:7:1.98e-26:121:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS10405
Response regulator Spo0A family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeSpo0ALength260 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000156015#BUTYVIB_RS10405Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length260 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 260 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa260 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
151-253 aa · 103 aa · 39.6% of protein
Raw token
Spo0A_C:151:5.27e-39:253:103:104- Raw architecture: Response_reg:7:1.98e-26:121:115:111#Spo0A_C:151:5.27e-39:253:103:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000156015::NZ_GG663524.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span869278-873785Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_02169RefSeq proteinWP_005604192.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00013Context members
BUTYVIB_RS10405BUTYVIB_RS10415
Partner locus tags
BUTYVIB_RS10405BUTYVIB_RS10415
Partner old locus tags
BUTYVIB_02169BUTYVIB_02171
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005604192.1Primary protein accession used for annex mappings.
UniProt accessionD4S247Primary UniProt accession resolved in the annex database.
UniProt IDD4S247_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS10405Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_02169Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval869 278-870 060 nt783 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span869 278-873 785 ntGCF_000156015::NZ_GG663524.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span869 278-873 785 nt4 508 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
869 278 nt873 785 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BUTYVIB_RS10405GCF_000156015#BUTYVIB_RS10405
RRSpo0ACurrent focus
869 278-870 060 nt · Reverse (-)
BUTYVIB_RS10415GCF_000156015#BUTYVIB_RS10415
HKHybrid
870 474-873 785 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS10405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653057
Simplified PFAM architecture for RROC_0653057
PFAM domain coverage: 215 / 260 aa (82.7%)
1 aa260 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-121] | Spo0A_C[152-251]
- Domain count: 2
- Matched identifier: RROC_0653057
- Positioned domains: Response_reg 7-121 ; Response_reg 7-121 ; Spo0A_C 152-251 ; Spo0A_C 152-251
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS10405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key