1 Response_reg#1
15-118 aa · 104 aa · 41.3% of protein
Raw token
Response_reg:15:5.4e-19:118:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BUTYVIB_RS06405
Response regulator LytTR family
Eshraghiella crossota DSM 2876 · GCF_000156015
ClassRRTypeLytTRLength252 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000156015#BUTYVIB_RS06405Stable P2CS identifier used across views.
GenomeGCF_000156015Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Eshraghiella
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage193 / 252 aa (76.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 LytTR#2
151-239 aa · 89 aa · 35.3% of protein
Raw token
LytTR:151:1.37e-17:239:94:98- Raw architecture: Response_reg:15:5.4e-19:118:106:111#LytTR:151:1.37e-17:239:94:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000156015::NZ_GG663524.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19742-20500Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBUTYVIB_01333RefSeq proteinWP_005602850.1
Context group ID
GCF_000156015::NZ_GG663524.1::G00002Context members
BUTYVIB_RS06405
Partner locus tags
BUTYVIB_RS06405
Partner old locus tags
BUTYVIB_01333
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005602850.1Primary protein accession used for annex mappings.
UniProt accessionD4RZS6Primary UniProt accession resolved in the annex database.
UniProt IDD4RZS6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBUTYVIB_RS06405Primary locus identifier stored in the genes table.
Old locus tagBUTYVIB_01333Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_GG663524.1Sequence record reported by the local genomic context database.
Genomic interval19 742-20 500 nt759 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 742-20 500 ntGCF_000156015::NZ_GG663524.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000156015::NZ_GG663524.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_GG663524.1All displayed genes belong to this local TCS context.
Neighborhood span19 742-20 500 nt759 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 742 nt20 500 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BUTYVIB_RS06405GCF_000156015#BUTYVIB_RS06405
RRLytTRCurrent focus
19 742-20 500 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000156015#BUTYVIB_RS06405The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0703624
Simplified PFAM architecture for RROC_0703624
PFAM domain coverage: 195 / 252 aa (77.4%)
1 aa252 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[15-119] | LytTR[153-242]
- Domain count: 2
- Matched identifier: RROC_0703624
- Positioned domains: Response_reg 15-119 ; Response_reg 15-119 ; LytTR 153-242 ; LytTR 153-242
Cluster members and taxonomy
Representative gene: GCF_000156015#BUTYVIB_RS06405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 511 680 · GCF_000156015
AssemblyASM15601v1 · Scaffoldhaploid
Genome composition2 496 039 bp · 37,5% GCEshraghiella crossota DSM 2876
Signal transduction countsGenes 50 · HK 18 · RR 31CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusEshraghiella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Eshraghiella
Related genes
Preview from the same derived genome key