1 Response_reg#1
1-106 aa · 106 aa · 42.1% of protein
Raw token
Response_reg:1:4.95e-18:106:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS12245
Response regulator, FrzZ family
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassRRTypeFrzZLength252 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154825#ANASTE_RS12245Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length252 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage224 / 252 aa (88.9%)Merged over positioned domains only.
Domain description2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa252 aa
Domain-by-domain annotation2 items
2 Response_reg#2
132-249 aa · 118 aa · 46.8% of protein
Raw token
Response_reg:132:3.92e-28:249:118:111- Raw architecture: Response_reg:1:4.95e-18:106:108:111#Response_reg:132:3.92e-28:249:118:111
- Domain description: 2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154825::NZ_DS560019.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span768186-770559Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_01823RefSeq proteinWP_007050585.1
Context group ID
GCF_000154825::NZ_DS560019.1::G00008Context members
ANASTE_RS08425ANASTE_RS12245
Partner locus tags
ANASTE_RS08425ANASTE_RS12245
Partner old locus tags
ANASTE_01822ANASTE_01823
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007050585.1Primary protein accession used for annex mappings.
UniProt accessionB1C9P9Primary UniProt accession resolved in the annex database.
UniProt IDB1C9P9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS12245Primary locus identifier stored in the genes table.
Old locus tagANASTE_01823Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560019.1Sequence record reported by the local genomic context database.
Genomic interval769 801-770 559 nt759 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span768 186-770 559 ntGCF_000154825::NZ_DS560019.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560019.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560019.1All displayed genes belong to this local TCS context.
Neighborhood span768 186-770 559 nt2 374 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
768 186 nt770 559 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ANASTE_RS08425GCF_000154825#ANASTE_RS08425
HKClassic
768 186-769 766 nt · Forward (+)
ANASTE_RS12245GCF_000154825#ANASTE_RS12245
RRFrzZCurrent focus
769 801-770 559 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS12245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0703620
Simplified PFAM architecture for RROC_0703620
PFAM domain coverage: 220 / 252 aa (87.3%)
1 aa252 aa
Response_regResponse_reg
- Simplified architecture: Response_reg + Response_reg
- Raw architecture: Response_reg[3-105] | Response_reg[132-248]
- Domain count: 2
- Matched identifier: RROC_0703620
- Positioned domains: Response_reg 3-105 ; Response_reg 3-105 ; Response_reg 132-248 ; Response_reg 132-248
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS12245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key