1 dCache_1#1
167-283 aa · 117 aa · 14.0% of protein
Raw token
dCache_1:167:0.000000045:283:118:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS11410
Histidine kinase, Hybrid
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassHKTypeHybridLength836 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154825#ANASTE_RS11410Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length836 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage420 / 836 aa (50.2%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa836 aa
Domain-by-domain annotation4 items
2 HisKA#2
456-522 aa · 67 aa · 8.0% of protein
Raw token
HisKA:456:0.0000000000000263:522:67:643 HATPase_c#3
569-686 aa · 118 aa · 14.1% of protein
Raw token
HATPase_c:569:2.3e-31:686:119:1094 Response_reg#4
713-830 aa · 118 aa · 14.1% of protein
Raw token
Response_reg:713:3.17e-28:830:118:111- Raw architecture: dCache_1:167:0.000000045:283:118:195#HisKA:456:0.0000000000000263:522:67:64#HATPase_c:569:2.3e-31:686:119:109#Response_reg:713:3.17e-28:830:118:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154825::NZ_DS560019.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span314893-317403Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_01352RefSeq proteinWP_052294600.1
Context group ID
GCF_000154825::NZ_DS560019.1::G00002Context members
ANASTE_RS11410
Partner locus tags
ANASTE_RS11410
Partner old locus tags
ANASTE_01352
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_052294600.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS11410Primary locus identifier stored in the genes table.
Old locus tagANASTE_01352Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560019.1Sequence record reported by the local genomic context database.
Genomic interval314 893-317 403 nt2 511 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span314 893-317 403 ntGCF_000154825::NZ_DS560019.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560019.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560019.1All displayed genes belong to this local TCS context.
Neighborhood span314 893-317 403 nt2 511 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
314 893 nt317 403 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ANASTE_RS11410GCF_000154825#ANASTE_RS11410
HKHybridCurrent focus
314 893-317 403 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS11410The current gene is the representative for this cluster.
PFAM architecturedCache_1 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0512275
Simplified PFAM architecture for HKOC_0512275
PFAM domain coverage: 543 / 836 aa (65.0%)
1 aa836 aa
dCache_1HisKAHATPase_cResponse_reg
- Simplified architecture: dCache_1 + HisKA + HATPase_c + Response_reg
- Raw architecture: dCache_1[42-283] | HisKA[456-522] | HATPase_c[569-685] | Response_reg[713-829]
- Domain count: 4
- Matched identifier: HKOC_0512275
- Positioned domains: dCache_1 42-283 ; HisKA 456-522 ; HATPase_c 569-685 ; Response_reg 713-829
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS11410
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key