1 GGDEF#1
261-408 aa · 148 aa · 18.8% of protein
Raw token
GGDEF:261:2.44e-40:408:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS11380
Response regulator, RpfG family
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassRRTypeRpfGLength786 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154825#ANASTE_RS11380Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length786 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage362 / 786 aa (46.1%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa786 aa
Domain-by-domain annotation3 items
2 Response_reg#2
436-540 aa · 105 aa · 13.4% of protein
Raw token
Response_reg:436:6.93e-24:540:108:1113 HD#3
628-736 aa · 109 aa · 13.9% of protein
Raw token
HD:628:0.000000000000992:736:109:110- Raw architecture: GGDEF:261:2.44e-40:408:157:160#Response_reg:436:6.93e-24:540:108:111#HD:628:0.000000000000992:736:109:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154825::NZ_DS560019.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span228930-231290Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_01269RefSeq proteinWP_007050037.1
Context group ID
GCF_000154825::NZ_DS560019.1::G00001Context members
ANASTE_RS11380
Partner locus tags
ANASTE_RS11380
Partner old locus tags
ANASTE_01269
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007050037.1Primary protein accession used for annex mappings.
UniProt accessionB1CBC0Primary UniProt accession resolved in the annex database.
UniProt IDB1CBC0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS11380Primary locus identifier stored in the genes table.
Old locus tagANASTE_01269Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560019.1Sequence record reported by the local genomic context database.
Genomic interval228 930-231 290 nt2 361 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span228 930-231 290 ntGCF_000154825::NZ_DS560019.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560019.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560019.1All displayed genes belong to this local TCS context.
Neighborhood span228 930-231 290 nt2 361 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
228 930 nt231 290 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ANASTE_RS11380GCF_000154825#ANASTE_RS11380
RRRpfGCurrent focus
228 930-231 290 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS11380The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0016745
Simplified PFAM architecture for RROC_0016745
PFAM domain coverage: 400 / 786 aa (50.9%)
1 aa786 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[260-407] | Response_reg[436-547] | HD_5[617-756]
- Domain count: 3
- Matched identifier: RROC_0016745
- Positioned domains: GGDEF 260-407 ; GGDEF 260-407 ; Response_reg 436-547 ; Response_reg 436-547 ; HD_5 617-756 ; HD_5 617-756
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS11380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key