1 Response_reg#1
5-114 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:5:2.46e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS08985
Response regulator OmpR family
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154825#ANASTE_RS08985Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:153:3.03e-28:229:77:77- Raw architecture: Response_reg:5:2.46e-37:114:111:111#Trans_reg_C:153:3.03e-28:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154825::NZ_DS560019.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span886624-890014Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_01942RefSeq proteinWP_007050702.1
Context group ID
GCF_000154825::NZ_DS560019.1::G00010Context members
ANASTE_RS08980ANASTE_RS08985
Partner locus tags
ANASTE_RS08980ANASTE_RS08985
Partner old locus tags
ANASTE_01941ANASTE_01942
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007050702.1Primary protein accession used for annex mappings.
UniProt accessionB1C968Primary UniProt accession resolved in the annex database.
UniProt IDB1C968_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS08985Primary locus identifier stored in the genes table.
Old locus tagANASTE_01942Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560019.1Sequence record reported by the local genomic context database.
Genomic interval889 307-890 014 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span886 624-890 014 ntGCF_000154825::NZ_DS560019.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560019.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560019.1All displayed genes belong to this local TCS context.
Neighborhood span886 624-890 014 nt3 391 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
886 624 nt890 014 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ANASTE_RS08980GCF_000154825#ANASTE_RS08980
HKClassic
886 624-889 314 nt · Forward (+)
ANASTE_RS08985GCF_000154825#ANASTE_RS08985
RROmpRCurrent focus
889 307-890 014 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS08985The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016710
Simplified PFAM architecture for RROC_1016710
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1016710
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS08985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key