1 dCache_1#1
169-281 aa · 113 aa · 15.9% of protein
Raw token
dCache_1:169:0.000000296:281:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS03835
Histidine kinase, Hybrid
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassHKTypeHybridLength710 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154825#ANASTE_RS03835Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
dCache_1HisKAHATPase_cResponse_reg
Protein length710 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage412 / 710 aa (58.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa710 aa
Domain-by-domain annotation4 items
2 HisKA#2
333-399 aa · 67 aa · 9.4% of protein
Raw token
HisKA:333:7.18e-16:399:67:643 HATPase_c#3
446-560 aa · 115 aa · 16.2% of protein
Raw token
HATPase_c:446:2.09e-28:560:115:1094 Response_reg#4
584-700 aa · 117 aa · 16.5% of protein
Raw token
Response_reg:584:4.03e-27:700:117:111- Raw architecture: dCache_1:169:0.000000296:281:113:195#HisKA:333:7.18e-16:399:67:64#HATPase_c:446:2.09e-28:560:115:109#Response_reg:584:4.03e-27:700:117:111
- Domain description: 1 dCache_1,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154825::NZ_DS560018.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span11294-13426Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_00182RefSeq proteinWP_007049637.1
Context group ID
GCF_000154825::NZ_DS560018.1::G00014Context members
ANASTE_RS03835
Partner locus tags
ANASTE_RS03835
Partner old locus tags
ANASTE_00182
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007049637.1Primary protein accession used for annex mappings.
UniProt accessionB1C643Primary UniProt accession resolved in the annex database.
UniProt IDB1C643_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS03835Primary locus identifier stored in the genes table.
Old locus tagANASTE_00182Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560018.1Sequence record reported by the local genomic context database.
Genomic interval11 294-13 426 nt2 133 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 294-13 426 ntGCF_000154825::NZ_DS560018.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560018.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560018.1All displayed genes belong to this local TCS context.
Neighborhood span11 294-13 426 nt2 133 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 294 nt13 426 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ANASTE_RS03835GCF_000154825#ANASTE_RS03835
HKHybridCurrent focus
11 294-13 426 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS03835The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0750610
Simplified PFAM architecture for HKOC_0750610
PFAM domain coverage: 297 / 710 aa (41.8%)
1 aa710 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[333-399] | HATPase_c[446-559] | Response_reg[584-699]
- Domain count: 3
- Matched identifier: HKOC_0750610
- Positioned domains: HisKA 333-399 ; HATPase_c 446-559 ; Response_reg 584-699
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS03835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key