1 PilJ#1
37-124 aa · 88 aa · 15.3% of protein
Raw token
PilJ:37:0.00000826:124:99:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ANASTE_RS03815
Histidine kinase, Hybrid
Anaerofustis stercorihominis DSM 17244 · GCF_000154825
ClassHKTypeHybridLength576 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154825#ANASTE_RS03815Stable P2CS identifier used across views.
GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis
Domain signature
Compact overview inferred from the domain field
PilJHisKAHATPase_cResponse_reg
Protein length576 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage387 / 576 aa (67.2%)Merged over positioned domains only.
Domain description1 PilJ,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa576 aa
Domain-by-domain annotation4 items
2 HisKA#2
197-263 aa · 67 aa · 11.6% of protein
Raw token
HisKA:197:8.73e-17:263:67:643 HATPase_c#3
309-426 aa · 118 aa · 20.5% of protein
Raw token
HATPase_c:309:7.88e-30:426:118:1094 Response_reg#4
453-566 aa · 114 aa · 19.8% of protein
Raw token
Response_reg:453:4.83e-26:566:114:111- Raw architecture: PilJ:37:0.00000826:124:99:112#HisKA:197:8.73e-17:263:67:64#HATPase_c:309:7.88e-30:426:118:109#Response_reg:453:4.83e-26:566:114:111
- Domain description: 1 PilJ,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154825::NZ_DS560018.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2336-4066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagANASTE_00177RefSeq proteinWP_039944965.1
Context group ID
GCF_000154825::NZ_DS560018.1::G00013Context members
ANASTE_RS03815
Partner locus tags
ANASTE_RS03815
Partner old locus tags
ANASTE_00177
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_039944965.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagANASTE_RS03815Primary locus identifier stored in the genes table.
Old locus tagANASTE_00177Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS560018.1Sequence record reported by the local genomic context database.
Genomic interval2 336-4 066 nt1 731 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 336-4 066 ntGCF_000154825::NZ_DS560018.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154825::NZ_DS560018.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS560018.1All displayed genes belong to this local TCS context.
Neighborhood span2 336-4 066 nt1 731 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 336 nt4 066 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
ANASTE_RS03815GCF_000154825#ANASTE_RS03815
HKHybridCurrent focus
2 336-4 066 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154825#ANASTE_RS03815The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1182905
Simplified PFAM architecture for HKOC_1182905
PFAM domain coverage: 297 / 576 aa (51.6%)
1 aa576 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[198-263] | HATPase_c[309-425] | Response_reg[453-566]
- Domain count: 3
- Matched identifier: HKOC_1182905
- Positioned domains: HisKA 198-263 ; HATPase_c 309-425 ; Response_reg 453-566
Cluster members and taxonomy
Representative gene: GCF_000154825#ANASTE_RS03815
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825
AssemblyASM15482v1 · Scaffoldreference genome · haploid
Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244
Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis
Related genes
Preview from the same derived genome key