Gene detail

ANASTE_RS00595

Histidine kinase, Hybrid

Anaerofustis stercorihominis DSM 17244 · GCF_000154825

Open genome Open selected cluster RefSeq UniProt

ClassHKTypeHybridLength915 aaTM0ValidatedNoCompleteYesContexttriad

Gene IDGCF_000154825#ANASTE_RS00595Stable P2CS identifier used across views.

GenomeGCF_000154825Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Anaerofustis

Selected clusterHKOC_0381964Run 6 · 2 sequences · id 100% · cov 80% · representative

External referencesWP_007048910.1 · B1C6V9 · MIST4 ANASTE_RS00595RefSeq · UniProt · MIST4

Domain signature

Compact overview inferred from the domain field

SBP_bac_3HisKAHATPase_cResponse_reg

Protein length915 aaLength used to scale native and Biotite-like views.

Annotated domains55 with usable coordinates.

Domain coverage703 / 915 aa (76.8%)Merged over positioned domains only.

Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa915 aa

Domain-by-domain annotation5 items

1 SBP_bac_3#1

48-252 aa · 205 aa · 22.4% of protein

Raw tokenSBP_bac_3:48:7.89e-17:252:220:224

2 SBP_bac_3#2

274-471 aa · 198 aa · 21.6% of protein

Raw tokenSBP_bac_3:274:3.88e-19:471:213:224

3 HisKA#3

544-609 aa · 66 aa · 7.2% of protein

Raw tokenHisKA:544:2.19e-17:609:66:64

4 HATPase_c#4

656-772 aa · 117 aa · 12.8% of protein

Raw tokenHATPase_c:656:6.87e-31:772:117:109

5 Response_reg#5

795-911 aa · 117 aa · 12.8% of protein

Raw tokenResponse_reg:795:8.83e-30:911:117:111

Raw architecture: SBP_bac_3:48:7.89e-17:252:220:224#SBP_bac_3:274:3.88e-19:471:213:224#HisKA:544:2.19e-17:609:66:64#HATPase_c:656:6.87e-31:772:117:109#Response_reg:795:8.83e-30:911:117:111
Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labeltriadGCF_000154825::NZ_DS560015.1::G00017

Group size33 locus tags listed below.

HK / RR2 / 1Counts resolved for the local TCS neighborhood.

Context span137154-142977Genomic interval covered by the local TCS group.

Identifiers

Old locus tagANASTE_00456RefSeq proteinWP_007048910.1

Context group IDGCF_000154825::NZ_DS560015.1::G00017

Context members

ANASTE_RS00595ANASTE_RS11145ANASTE_RS11150

Partner locus tags

ANASTE_RS00595ANASTE_RS11145ANASTE_RS11150

Partner old locus tags

ANASTE_00456ANASTE_00458ANASTE_00459

Partner protein IDs

WP_007048910.1 WP_341271221.1 WP_007048913.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

RefSeqWP_007048910.1Primary protein accession used for annex mappings.

UniProt accessionB1C6V9Primary UniProt accession resolved in the annex database.

UniProt IDB1C6V9_9FIRMDisplay identifier provided by UniProt.

GO / PubMed1 / 0Unique GO terms and literature references available below.

Reference hubs

Open RefSeq Open UniProt accession

GO terms

GO:0000155

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagANASTE_RS00595Primary locus identifier stored in the genes table.

Old locus tagANASTE_00456Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_DS560015.1Sequence record reported by the local genomic context database.

Genomic interval137 154-139 901 nt2 748 nt · Forward (+)

StrandForward (+)Strand sign follows the local context database convention.

Local TCS group span137 154-142 977 ntGCF_000154825::NZ_DS560015.1::G00017

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000154825::NZ_DS560015.1::G00017

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labeltriadNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_DS560015.1All displayed genes belong to this local TCS context.

Neighborhood span137 154-142 977 nt5 824 nt

Members31 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

137 154 nt142 977 nt

+-ANASTE_RS00595 ANASTE_RS11145

Neighborhood gene cards

3 genes in the current local neighborhood.

ANASTE_RS00595GCF_000154825#ANASTE_RS00595

HKHybridCurrent focus

137 154-139 901 nt · Forward (+)

Old locus ANASTE_00456RefSeq WP_007048910.1

Open current gene

ANASTE_RS11145GCF_000154825#ANASTE_RS11145

HKClassic

140 397-142 628 nt · Forward (+)

Old locus ANASTE_00458RefSeq WP_341271221.1

Open gene

ANASTE_RS11150GCF_000154825#ANASTE_RS11150

RRCheY

142 588-142 977 nt · Forward (+)

Old locus ANASTE_00459RefSeq WP_007048913.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0381964HK

Run 62 sequencesid 100%cov 80%

PFAM SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg

Current gene is the representative sequence.

Selected clusterHKOC_0381964Run 6 · HK · 2 sequences

Representative sequenceGCF_000154825#ANASTE_RS00595The current gene is the representative for this cluster.

PFAM architectureSBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg5 domains in the representative PFAM annotation.

Open in cluster search

PFAM architecture for HKOC_0381964

Simplified PFAM architecture for HKOC_0381964

PFAM domain coverage: 702 / 915 aa (76.7%)

1 aa915 aa

SBP_bac_3SBP_bac_3HisKAHATPase_cResponse_reg

Simplified architecture: SBP_bac_3 + SBP_bac_3 + HisKA + HATPase_c + Response_reg
Raw architecture: SBP_bac_3[48-251] | SBP_bac_3[274-472] | HisKA[544-609] | HATPase_c[656-771] | Response_reg[795-911]
Domain count: 5
Matched identifier: HKOC_0381964
Positioned domains: SBP_bac_3 48-251 ; SBP_bac_3 274-472 ; HisKA 544-609 ; HATPase_c 656-771 ; Response_reg 795-911

Cluster members and taxonomy

Representative gene: GCF_000154825#ANASTE_RS00595

Sankey plot built from the taxonomy of all members in the selected cluster.

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 445 971 · GCF_000154825

AssemblyASM15482v1 · Scaffoldreference genome · haploid

Genome composition2 284 703 bp · 33,5% GCAnaerofustis stercorihominis DSM 17244

Signal transduction countsGenes 38 · HK 22 · RR 14CheA 0 · PP 2

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyEubacteriaceaeGenusAnaerofustis

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Eubacteriaceae7Anaerofustis

Open genome Search genes in genome Search HK genes NCBI assembly files

Related genes

Preview from the same derived genome key