1 HisKA#1
476-542 aa · 67 aa · 9.6% of protein
Raw token
HisKA:476:0.0000000000000573:542:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS13850
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength698 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS13850Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length698 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 698 aa (22.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa698 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
589-680 aa · 92 aa · 13.2% of protein
Raw token
HATPase_c:589:0.0000000000299:680:96:109- Raw architecture: HisKA:476:0.0000000000000573:542:67:64#HATPase_c:589:0.0000000000299:680:96:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499659.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span872814-875624Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_02900RefSeq proteinWP_003539047.1
Context group ID
GCF_000154485::NZ_DS499659.1::G00005Context members
CLORAM_RS13850CLORAM_RS13855
Partner locus tags
CLORAM_RS13850CLORAM_RS13855
Partner old locus tags
CLORAM_02900CLORAM_02901
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003539047.1Primary protein accession used for annex mappings.
UniProt accessionB0N8G6Primary UniProt accession resolved in the annex database.
UniProt IDB0N8G6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS13850Primary locus identifier stored in the genes table.
Old locus tagCLORAM_02900Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499659.1Sequence record reported by the local genomic context database.
Genomic interval872 814-874 910 nt2 097 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span872 814-875 624 ntGCF_000154485::NZ_DS499659.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499659.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499659.1All displayed genes belong to this local TCS context.
Neighborhood span872 814-875 624 nt2 811 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
872 814 nt875 624 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS13850GCF_000154485#CLORAM_RS13850
HKClassicCurrent focus
872 814-874 910 nt · Reverse (-)
CLORAM_RS13855GCF_000154485#CLORAM_RS13855
RROmpR
874 914-875 624 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS13850The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0773099
Simplified PFAM architecture for HKOC_0773099
PFAM domain coverage: 159 / 698 aa (22.8%)
1 aa698 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[476-542] | HATPase_c[589-680]
- Domain count: 2
- Matched identifier: HKOC_0773099
- Positioned domains: HisKA 476-542 ; HATPase_c 589-680
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS13850
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key