1 Response_reg#1
9-116 aa · 108 aa · 39.9% of protein
Raw token
Response_reg:9:0.0000000926:116:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS02925
Response regulator Spo0A family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeSpo0ALength271 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154485#CLORAM_RS02925Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage212 / 271 aa (78.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
153-256 aa · 104 aa · 38.4% of protein
Raw token
Spo0A_C:153:4.68e-60:256:104:104- Raw architecture: Response_reg:9:0.0000000926:116:108:111#Spo0A_C:153:4.68e-60:256:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154485::NZ_DS499654.1::G00021
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span320708-321523Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00605RefSeq proteinWP_003535410.1
Context group ID
GCF_000154485::NZ_DS499654.1::G00021Context members
CLORAM_RS02925
Partner locus tags
CLORAM_RS02925
Partner old locus tags
CLORAM_00605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535410.1Primary protein accession used for annex mappings.
UniProt accessionB0N1X0Primary UniProt accession resolved in the annex database.
UniProt IDB0N1X0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS02925Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499654.1Sequence record reported by the local genomic context database.
Genomic interval320 708-321 523 nt816 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span320 708-321 523 ntGCF_000154485::NZ_DS499654.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499654.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499654.1All displayed genes belong to this local TCS context.
Neighborhood span320 708-321 523 nt816 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
320 708 nt321 523 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CLORAM_RS02925GCF_000154485#CLORAM_RS02925
RRSpo0ACurrent focus
320 708-321 523 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02925The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0611961
Simplified PFAM architecture for RROC_0611961
PFAM domain coverage: 212 / 271 aa (78.2%)
1 aa271 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[9-116] | Spo0A_C[153-256]
- Domain count: 2
- Matched identifier: RROC_0611961
- Positioned domains: Response_reg 9-116 ; Response_reg 9-116 ; Spo0A_C 153-256 ; Spo0A_C 153-256
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key