1 HAMP#1
59-128 aa · 70 aa · 19.9% of protein
Raw token
HAMP:59:0.00000000131:128:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS02470
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS02470Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 351 aa (68.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation3 items
2 HisKA#2
133-196 aa · 64 aa · 18.2% of protein
Raw token
HisKA:133:0.00000000000347:196:64:643 HATPase_c#3
242-349 aa · 108 aa · 30.8% of protein
Raw token
HATPase_c:242:5.62e-26:349:109:109- Raw architecture: HAMP:59:0.00000000131:128:70:69#HisKA:133:0.00000000000347:196:64:64#HATPase_c:242:5.62e-26:349:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499654.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213341-215063Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00513RefSeq proteinWP_003535238.1
Context group ID
GCF_000154485::NZ_DS499654.1::G00020Context members
CLORAM_RS02470CLORAM_RS02475
Partner locus tags
CLORAM_RS02470CLORAM_RS02475
Partner old locus tags
CLORAM_00513CLORAM_00514
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535238.1Primary protein accession used for annex mappings.
UniProt accessionA0AB35IMB6Primary UniProt accession resolved in the annex database.
UniProt IDA0AB35IMB6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS02470Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00513Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499654.1Sequence record reported by the local genomic context database.
Genomic interval213 341-214 396 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span213 341-215 063 ntGCF_000154485::NZ_DS499654.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499654.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499654.1All displayed genes belong to this local TCS context.
Neighborhood span213 341-215 063 nt1 723 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 341 nt215 063 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS02470GCF_000154485#CLORAM_RS02470
HKClassicCurrent focus
213 341-214 396 nt · Reverse (-)
CLORAM_RS02475GCF_000154485#CLORAM_RS02475
RROmpR
214 383-215 063 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS02470The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2792554
Simplified PFAM architecture for HKOC_2792554
PFAM domain coverage: 174 / 351 aa (49.6%)
1 aa351 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[133-197] | HATPase_c[242-350]
- Domain count: 2
- Matched identifier: HKOC_2792554
- Positioned domains: HisKA 133-197 ; HATPase_c 242-350
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key