1 HAMP#1
106-169 aa · 64 aa · 16.1% of protein
Raw token
HAMP:106:0.0000582:169:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS12615
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength397 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS12615Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length397 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage236 / 397 aa (59.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
180-249 aa · 70 aa · 17.6% of protein
Raw token
HisKA:180:0.00000000345:249:70:643 HATPase_c#3
295-396 aa · 102 aa · 25.7% of protein
Raw token
HATPase_c:295:6.35e-18:396:105:109- Raw architecture: HAMP:106:0.0000582:169:64:69#HisKA:180:0.00000000345:249:70:64#HATPase_c:295:6.35e-18:396:105:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499659.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span608375-610227Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_02637RefSeq proteinWP_003538591.1
Context group ID
GCF_000154485::NZ_DS499659.1::G00004Context members
CLORAM_RS12615CLORAM_RS12620
Partner locus tags
CLORAM_RS12615CLORAM_RS12620
Partner old locus tags
CLORAM_02637CLORAM_02638
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003538591.1Primary protein accession used for annex mappings.
UniProt accessionB0N7Q4Primary UniProt accession resolved in the annex database.
UniProt IDB0N7Q4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS12615Primary locus identifier stored in the genes table.
Old locus tagCLORAM_02637Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499659.1Sequence record reported by the local genomic context database.
Genomic interval608 375-609 568 nt1 194 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span608 375-610 227 ntGCF_000154485::NZ_DS499659.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499659.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499659.1All displayed genes belong to this local TCS context.
Neighborhood span608 375-610 227 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
608 375 nt610 227 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS12615GCF_000154485#CLORAM_RS12615
HKClassicCurrent focus
608 375-609 568 nt · Reverse (-)
CLORAM_RS12620GCF_000154485#CLORAM_RS12620
RROmpR
609 556-610 227 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS12615The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2469888
Simplified PFAM architecture for HKOC_2469888
PFAM domain coverage: 214 / 397 aa (53.9%)
1 aa397 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[123-168] | HisKA[181-249] | HATPase_c[296-394]
- Domain count: 3
- Matched identifier: HKOC_2469888
- Positioned domains: HAMP 123-168 ; HisKA 181-249 ; HATPase_c 296-394
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS12615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key