1 Response_reg#1
5-114 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:5:1.88e-24:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS00625
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS00625Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:146:1.57e-22:219:77:77- Raw architecture: Response_reg:5:1.88e-24:114:110:111#Trans_reg_C:146:1.57e-22:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499653.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117782-119666Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00125RefSeq proteinWP_008792785.1
Context group ID
GCF_000154485::NZ_DS499653.1::G00026Context members
CLORAM_RS00620CLORAM_RS00625
Partner locus tags
CLORAM_RS00620CLORAM_RS00625
Partner old locus tags
CLORAM_00124CLORAM_00125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008792785.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3EDU1Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3EDU1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS00625Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499653.1Sequence record reported by the local genomic context database.
Genomic interval118 992-119 666 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 782-119 666 ntGCF_000154485::NZ_DS499653.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499653.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499653.1All displayed genes belong to this local TCS context.
Neighborhood span117 782-119 666 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 782 nt119 666 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS00620GCF_000154485#CLORAM_RS00620
HKClassic
117 782-118 999 nt · Reverse (-)
CLORAM_RS00625GCF_000154485#CLORAM_RS00625
RROmpRCurrent focus
118 992-119 666 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS00625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529071
Simplified PFAM architecture for RROC_1529071
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1529071
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS00625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key