1 PAS_4#1
85-180 aa · 96 aa · 23.7% of protein
Raw token
PAS_4:85:0.0000000579:180:111:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS00620
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength405 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS00620Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length405 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage271 / 405 aa (66.9%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
184-251 aa · 68 aa · 16.8% of protein
Raw token
HisKA:184:8.98e-18:251:68:643 HATPase_c#3
297-403 aa · 107 aa · 26.4% of protein
Raw token
HATPase_c:297:8.54e-35:403:107:109- Raw architecture: PAS_4:85:0.0000000579:180:111:110#HisKA:184:8.98e-18:251:68:64#HATPase_c:297:8.54e-35:403:107:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499653.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117782-119666Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00124RefSeq proteinWP_003534561.1
Context group ID
GCF_000154485::NZ_DS499653.1::G00026Context members
CLORAM_RS00620CLORAM_RS00625
Partner locus tags
CLORAM_RS00620CLORAM_RS00625
Partner old locus tags
CLORAM_00124CLORAM_00125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003534561.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E3A994Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E3A994_9FIRMDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS00620Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00124Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499653.1Sequence record reported by the local genomic context database.
Genomic interval117 782-118 999 nt1 218 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 782-119 666 ntGCF_000154485::NZ_DS499653.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499653.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499653.1All displayed genes belong to this local TCS context.
Neighborhood span117 782-119 666 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 782 nt119 666 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS00620GCF_000154485#CLORAM_RS00620
HKClassicCurrent focus
117 782-118 999 nt · Reverse (-)
CLORAM_RS00625GCF_000154485#CLORAM_RS00625
RROmpR
118 992-119 666 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS00620The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2397622
Simplified PFAM architecture for HKOC_2397622
PFAM domain coverage: 173 / 405 aa (42.7%)
1 aa405 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[185-250] | HATPase_c[297-403]
- Domain count: 2
- Matched identifier: HKOC_2397622
- Positioned domains: HisKA 185-250 ; HATPase_c 297-403
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS00620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key