1 Response_reg#1
5-114 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:5:6.54e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS11600
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS11600Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-219 aa · 71 aa · 31.8% of protein
Raw token
Trans_reg_C:149:8.12e-25:219:73:77- Raw architecture: Response_reg:5:6.54e-41:114:111:111#Trans_reg_C:149:8.12e-25:219:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499659.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span397960-400019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_02425RefSeq proteinWP_003538209.1
Context group ID
GCF_000154485::NZ_DS499659.1::G00003Context members
CLORAM_RS11600CLORAM_RS11605
Partner locus tags
CLORAM_RS11600CLORAM_RS11605
Partner old locus tags
CLORAM_02425CLORAM_02426
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003538209.1Primary protein accession used for annex mappings.
UniProt accessionB0N742Primary UniProt accession resolved in the annex database.
UniProt IDB0N742_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS11600Primary locus identifier stored in the genes table.
Old locus tagCLORAM_02425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499659.1Sequence record reported by the local genomic context database.
Genomic interval397 960-398 631 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span397 960-400 019 ntGCF_000154485::NZ_DS499659.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499659.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499659.1All displayed genes belong to this local TCS context.
Neighborhood span397 960-400 019 nt2 060 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
397 960 nt400 019 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS11600GCF_000154485#CLORAM_RS11600
RROmpRCurrent focus
397 960-398 631 nt · Forward (+)
CLORAM_RS11605GCF_000154485#CLORAM_RS11605
HKClassic
398 628-400 019 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS11600The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587353
Simplified PFAM architecture for RROC_1587353
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[149-219]
- Domain count: 2
- Matched identifier: RROC_1587353
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 149-219 ; Trans_reg_C 149-219
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS11600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key