1 Response_reg#1
7-114 aa · 108 aa · 49.8% of protein
Raw token
Response_reg:7:1.53e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS07185
Response regulator OmpR family
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassRRTypeOmpRLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS07185Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 217 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-216 aa · 72 aa · 33.2% of protein
Raw token
Trans_reg_C:145:8.59e-25:216:77:77- Raw architecture: Response_reg:7:1.53e-26:114:109:111#Trans_reg_C:145:8.59e-25:216:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499656.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46092-48082Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_01485RefSeq proteinWP_003536901.1
Context group ID
GCF_000154485::NZ_DS499656.1::G00008Context members
CLORAM_RS07185CLORAM_RS07190
Partner locus tags
CLORAM_RS07185CLORAM_RS07190
Partner old locus tags
CLORAM_01485CLORAM_01486
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003536901.1Primary protein accession used for annex mappings.
UniProt accessionB0N4D4Primary UniProt accession resolved in the annex database.
UniProt IDB0N4D4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS07185Primary locus identifier stored in the genes table.
Old locus tagCLORAM_01485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499656.1Sequence record reported by the local genomic context database.
Genomic interval46 092-46 745 nt654 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 092-48 082 ntGCF_000154485::NZ_DS499656.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499656.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499656.1All displayed genes belong to this local TCS context.
Neighborhood span46 092-48 082 nt1 991 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 092 nt48 082 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS07185GCF_000154485#CLORAM_RS07185
RROmpRCurrent focus
46 092-46 745 nt · Forward (+)
CLORAM_RS07190GCF_000154485#CLORAM_RS07190
HKClassic
46 745-48 082 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS07185The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847664
Simplified PFAM architecture for RROC_1847664
PFAM domain coverage: 181 / 217 aa (83.4%)
1 aa217 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1847664
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 145-216 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS07185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key