1 HAMP#1
175-244 aa · 70 aa · 14.6% of protein
Raw token
HAMP:175:6.78e-16:244:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CLORAM_RS03890
Histidine kinase, Classic
Thomasclavelia ramosa DSM 1402 · GCF_000154485
ClassHKTypeClassicLength479 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154485#CLORAM_RS03890Stable P2CS identifier used across views.
GenomeGCF_000154485Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Thomasclavelia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length479 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage234 / 479 aa (48.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa479 aa
Domain-by-domain annotation3 items
2 HisKA#2
259-315 aa · 57 aa · 11.9% of protein
Raw token
HisKA:259:0.0000000011:315:57:643 HATPase_c#3
365-471 aa · 107 aa · 22.3% of protein
Raw token
HATPase_c:365:1.92e-24:471:107:109- Raw architecture: HAMP:175:6.78e-16:244:70:69#HisKA:259:0.0000000011:315:57:64#HATPase_c:365:1.92e-24:471:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154485::NZ_DS499655.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3453-5548Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCLORAM_00802RefSeq proteinWP_003535768.1
Context group ID
GCF_000154485::NZ_DS499655.1::G00013Context members
CLORAM_RS03885CLORAM_RS03890
Partner locus tags
CLORAM_RS03885CLORAM_RS03890
Partner old locus tags
CLORAM_00801CLORAM_00802
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003535768.1Primary protein accession used for annex mappings.
UniProt accessionB0N2R6Primary UniProt accession resolved in the annex database.
UniProt IDB0N2R6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCLORAM_RS03890Primary locus identifier stored in the genes table.
Old locus tagCLORAM_00802Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS499655.1Sequence record reported by the local genomic context database.
Genomic interval4 109-5 548 nt1 440 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 453-5 548 ntGCF_000154485::NZ_DS499655.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154485::NZ_DS499655.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS499655.1All displayed genes belong to this local TCS context.
Neighborhood span3 453-5 548 nt2 096 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 453 nt5 548 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CLORAM_RS03885GCF_000154485#CLORAM_RS03885
RROmpR
3 453-4 109 nt · Forward (+)
CLORAM_RS03890GCF_000154485#CLORAM_RS03890
HKClassicCurrent focus
4 109-5 548 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154485#CLORAM_RS03890The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1628224
Simplified PFAM architecture for HKOC_1628224
PFAM domain coverage: 217 / 479 aa (45.3%)
1 aa479 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-243] | HisKA[257-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1628224
- Positioned domains: HAMP 193-243 ; HisKA 257-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_000154485#CLORAM_RS03890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 445 974 · GCF_000154485
AssemblyASM15448v1 · Scaffoldhaploid
Genome composition3 235 195 bp · 31,5% GCThomasclavelia ramosa DSM 1402
Signal transduction countsGenes 49 · HK 22 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusThomasclavelia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Thomasclavelia
Related genes
Preview from the same derived genome key