1 HisKA#1
594-659 aa · 66 aa · 8.1% of protein
Raw token
HisKA:594:8.36e-17:659:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS13585
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength819 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS13585Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length819 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 819 aa (19.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa819 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
705-798 aa · 94 aa · 11.5% of protein
Raw token
HATPase_c:705:0.0000000000294:798:98:109- Raw architecture: HisKA:594:8.36e-17:659:66:64#HATPase_c:705:0.0000000000294:798:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483523.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154007-157155Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_01725RefSeq proteinWP_004849294.1
Context group ID
GCF_000154425::NZ_DS483523.1::G00037Context members
COPEUT_RS13585COPEUT_RS01865
Partner locus tags
COPEUT_RS13585COPEUT_RS01865
Partner old locus tags
COPEUT_01725COPEUT_01726
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004849294.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS13585Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_01725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483523.1Sequence record reported by the local genomic context database.
Genomic interval154 007-156 466 nt2 460 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 007-157 155 ntGCF_000154425::NZ_DS483523.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483523.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483523.1All displayed genes belong to this local TCS context.
Neighborhood span154 007-157 155 nt3 149 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 007 nt157 155 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS13585GCF_000154425#COPEUT_RS13585
HKClassicCurrent focus
154 007-156 466 nt · Reverse (-)
COPEUT_RS01865GCF_000154425#COPEUT_RS01865
RROmpR
156 466-157 155 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS13585The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0530725
Simplified PFAM architecture for HKOC_0530725
PFAM domain coverage: 157 / 819 aa (19.2%)
1 aa819 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[594-658] | HATPase_c[706-797]
- Domain count: 2
- Matched identifier: HKOC_0530725
- Positioned domains: HisKA 594-658 ; HATPase_c 706-797
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS13585
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key