1 Response_reg#1
23-137 aa · 115 aa · 45.3% of protein
Raw token
Response_reg:23:5.53e-18:137:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS00325
Response regulator LytTR family
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassRRTypeLytTRLength254 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS00325Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length254 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 254 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa254 aa
Domain-by-domain annotation2 items
2 LytTR#2
159-246 aa · 88 aa · 34.6% of protein
Raw token
LytTR:159:0.000000000285:246:93:98- Raw architecture: Response_reg:23:5.53e-18:137:117:111#LytTR:159:0.000000000285:246:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483520.1::G00042
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span72378-73142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02868RefSeq proteinWP_004848708.1
Context group ID
GCF_000154425::NZ_DS483520.1::G00042Context members
COPEUT_RS00325
Partner locus tags
COPEUT_RS00325
Partner old locus tags
COPEUT_02868
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004848708.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS00325Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02868Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483520.1Sequence record reported by the local genomic context database.
Genomic interval72 378-73 142 nt765 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 378-73 142 ntGCF_000154425::NZ_DS483520.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483520.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483520.1All displayed genes belong to this local TCS context.
Neighborhood span72 378-73 142 nt765 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 378 nt73 142 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS00325GCF_000154425#COPEUT_RS00325
RRLytTRCurrent focus
72 378-73 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS00325The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0687791
Simplified PFAM architecture for RROC_0687791
PFAM domain coverage: 207 / 254 aa (81.5%)
1 aa254 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[23-137] | LytTR[160-251]
- Domain count: 2
- Matched identifier: RROC_0687791
- Positioned domains: Response_reg 23-137 ; Response_reg 23-137 ; LytTR 160-251 ; LytTR 160-251
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS00325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key