1 Response_reg#1
3-103 aa · 101 aa · 46.5% of protein
Raw token
Response_reg:3:3.74e-27:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS00110
Response regulator NarL family
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS00110Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 217 aa (71.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa217 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:158:3.36e-20:211:54:58- Raw architecture: Response_reg:3:3.74e-27:103:101:111#HTH_LUXR:158:3.36e-20:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483520.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20994-22795Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02817RefSeq proteinWP_004848614.1
Context group ID
GCF_000154425::NZ_DS483520.1::G00039Context members
COPEUT_RS00110COPEUT_RS00115
Partner locus tags
COPEUT_RS00110COPEUT_RS00115
Partner old locus tags
COPEUT_02817COPEUT_02818
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004848614.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS00110Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02817Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483520.1Sequence record reported by the local genomic context database.
Genomic interval20 994-21 647 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 994-22 795 ntGCF_000154425::NZ_DS483520.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483520.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483520.1All displayed genes belong to this local TCS context.
Neighborhood span20 994-22 795 nt1 802 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 994 nt22 795 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS00110GCF_000154425#COPEUT_RS00110
RRNarLCurrent focus
20 994-21 647 nt · Reverse (-)
COPEUT_RS00115GCF_000154425#COPEUT_RS00115
HKClassic
21 644-22 795 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS00110The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1847661
Simplified PFAM architecture for RROC_1847661
PFAM domain coverage: 155 / 217 aa (71.4%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1847661
- Positioned domains: Response_reg 3-104 ; Response_reg 3-104 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS00110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key