1 Response_reg#1
8-122 aa · 115 aa · 42.6% of protein
Raw token
Response_reg:8:9.19e-17:122:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS00885
Response regulator Spo0A family
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassRRTypeSpo0ALength270 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS00885Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length270 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 270 aa (81.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa270 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
159-262 aa · 104 aa · 38.5% of protein
Raw token
Spo0A_C:159:2.26e-60:262:104:104- Raw architecture: Response_reg:8:9.19e-17:122:115:111#Spo0A_C:159:2.26e-60:262:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483520.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span202235-203047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02989RefSeq proteinWP_004848925.1
Context group ID
GCF_000154425::NZ_DS483520.1::G00043Context members
COPEUT_RS00885
Partner locus tags
COPEUT_RS00885
Partner old locus tags
COPEUT_02989
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004848925.1Primary protein accession used for annex mappings.
UniProt accessionA0A412IVA9Primary UniProt accession resolved in the annex database.
UniProt IDA0A412IVA9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS00885Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02989Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483520.1Sequence record reported by the local genomic context database.
Genomic interval202 235-203 047 nt813 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span202 235-203 047 ntGCF_000154425::NZ_DS483520.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483520.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483520.1All displayed genes belong to this local TCS context.
Neighborhood span202 235-203 047 nt813 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
202 235 nt203 047 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS00885GCF_000154425#COPEUT_RS00885
RRSpo0ACurrent focus
202 235-203 047 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS00885The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0614473
Simplified PFAM architecture for RROC_0614473
PFAM domain coverage: 217 / 270 aa (80.4%)
1 aa270 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[9-121] | Spo0A_C[159-262]
- Domain count: 2
- Matched identifier: RROC_0614473
- Positioned domains: Response_reg 9-121 ; Response_reg 9-121 ; Spo0A_C 159-262 ; Spo0A_C 159-262
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS00885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key