1 HisKA#1
87-146 aa · 60 aa · 19.9% of protein
Raw token
HisKA:87:0.00000000000164:146:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS12555
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS12555Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 302 aa (50.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-282 aa · 91 aa · 30.1% of protein
Raw token
HATPase_c:192:4.95e-16:282:92:109- Raw architecture: HisKA:87:0.00000000000164:146:60:64#HATPase_c:192:4.95e-16:282:92:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483540.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span72018-72926Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_02575RefSeq proteinWP_004853759.1
Context group ID
GCF_000154425::NZ_DS483540.1::G00002Context members
COPEUT_RS12555
Partner locus tags
COPEUT_RS12555
Partner old locus tags
COPEUT_02575
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004853759.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS12555Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_02575Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483540.1Sequence record reported by the local genomic context database.
Genomic interval72 018-72 926 nt909 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span72 018-72 926 ntGCF_000154425::NZ_DS483540.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483540.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483540.1All displayed genes belong to this local TCS context.
Neighborhood span72 018-72 926 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
72 018 nt72 926 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS12555GCF_000154425#COPEUT_RS12555
HKClassicCurrent focus
72 018-72 926 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS12555The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884671
Simplified PFAM architecture for HKOC_2884671
PFAM domain coverage: 156 / 302 aa (51.7%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-146] | HATPase_c[193-288]
- Domain count: 2
- Matched identifier: HKOC_2884671
- Positioned domains: HisKA 87-146 ; HATPase_c 193-288
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS12555
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key