1 HisKA#1
139-202 aa · 64 aa · 17.7% of protein
Raw token
HisKA:139:0.000000000000974:202:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS11540
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS11540Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 361 aa (48.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-361 aa · 110 aa · 30.5% of protein
Raw token
HATPase_c:252:1.76e-27:361:111:109- Raw architecture: HisKA:139:0.000000000000974:202:64:64#HATPase_c:252:1.76e-27:361:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483538.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span50608-52381Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_01881RefSeq proteinWP_004853368.1
Context group ID
GCF_000154425::NZ_DS483538.1::G00004Context members
COPEUT_RS11535COPEUT_RS11540
Partner locus tags
COPEUT_RS11535COPEUT_RS11540
Partner old locus tags
COPEUT_01880COPEUT_01881
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004853368.1Primary protein accession used for annex mappings.
UniProt accessionA0A412IFG2Primary UniProt accession resolved in the annex database.
UniProt IDA0A412IFG2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS11540Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_01881Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483538.1Sequence record reported by the local genomic context database.
Genomic interval51 296-52 381 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span50 608-52 381 ntGCF_000154425::NZ_DS483538.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483538.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483538.1All displayed genes belong to this local TCS context.
Neighborhood span50 608-52 381 nt1 774 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
50 608 nt52 381 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS11535GCF_000154425#COPEUT_RS11535
RROmpR
50 608-51 309 nt · Forward (+)
COPEUT_RS11540GCF_000154425#COPEUT_RS11540
HKClassicCurrent focus
51 296-52 381 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS11540The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2740561
Simplified PFAM architecture for HKOC_2740561
PFAM domain coverage: 172 / 361 aa (47.6%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[140-202] | HATPase_c[252-360]
- Domain count: 2
- Matched identifier: HKOC_2740561
- Positioned domains: HisKA 140-202 ; HATPase_c 252-360
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS11540
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key