1 dCache_1#1
116-263 aa · 148 aa · 25.0% of protein
Raw token
dCache_1:116:0.00000000042:263:153:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS10230
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS10230Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage336 / 592 aa (56.8%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation3 items
2 His_kinase#2
363-442 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:363:2.5e-33:442:80:803 HATPase_c#3
458-565 aa · 108 aa · 18.2% of protein
Raw token
HATPase_c:458:1.19e-16:565:111:109- Raw architecture: dCache_1:116:0.00000000042:263:153:195#His_kinase:363:2.5e-33:442:80:80#HATPase_c:458:1.19e-16:565:111:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483534.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span132301-135848Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_01201RefSeq proteinWP_004852834.1
Context group ID
GCF_000154425::NZ_DS483534.1::G00008Context members
COPEUT_RS10225COPEUT_RS10230
Partner locus tags
COPEUT_RS10225COPEUT_RS10230
Partner old locus tags
COPEUT_01200COPEUT_01201
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004852834.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS10230Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_01201Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483534.1Sequence record reported by the local genomic context database.
Genomic interval133 941-135 848 nt1 908 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span132 301-135 848 ntGCF_000154425::NZ_DS483534.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483534.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483534.1All displayed genes belong to this local TCS context.
Neighborhood span132 301-135 848 nt3 548 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
132 301 nt135 848 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS10225GCF_000154425#COPEUT_RS10225
RRunclassified
132 301-133 908 nt · Forward (+)
COPEUT_RS10230GCF_000154425#COPEUT_RS10230
HKClassicCurrent focus
133 941-135 848 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025149915#NQ536_RS13490Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0934669
Simplified PFAM architecture for HKOC_0934669
PFAM domain coverage: 422 / 635 aa (66.5%)
1 aa635 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[72-305] | His_kinase[407-485] | HATPase_c[501-609]
- Domain count: 3
- Matched identifier: HKOC_0934669
- Positioned domains: dCache_1 72-305 ; His_kinase 407-485 ; HATPase_c 501-609
Cluster members and taxonomy
Representative gene: GCF_025149915#NQ536_RS13490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key