1 HAMP#1
197-268 aa · 72 aa · 12.7% of protein
Raw token
HAMP:197:2.04e-17:268:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS09870
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength569 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS09870Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length569 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage252 / 569 aa (44.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa569 aa
Domain-by-domain annotation3 items
2 HisKA#2
279-346 aa · 68 aa · 12.0% of protein
Raw token
HisKA:279:0.00000000000000466:346:68:643 HATPase_c#3
394-505 aa · 112 aa · 19.7% of protein
Raw token
HATPase_c:394:1.41e-33:505:112:109- Raw architecture: HAMP:197:2.04e-17:268:72:69#HisKA:279:0.00000000000000466:346:68:64#HATPase_c:394:1.41e-33:505:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483534.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42148-44524Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_01118RefSeq proteinWP_004852682.1
Context group ID
GCF_000154425::NZ_DS483534.1::G00007Context members
COPEUT_RS09865COPEUT_RS09870
Partner locus tags
COPEUT_RS09865COPEUT_RS09870
Partner old locus tags
COPEUT_01117COPEUT_01118
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004852682.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS09870Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_01118Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483534.1Sequence record reported by the local genomic context database.
Genomic interval42 815-44 524 nt1 710 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 148-44 524 ntGCF_000154425::NZ_DS483534.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483534.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483534.1All displayed genes belong to this local TCS context.
Neighborhood span42 148-44 524 nt2 377 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 148 nt44 524 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS09865GCF_000154425#COPEUT_RS09865
RROmpR
42 148-42 837 nt · Reverse (-)
COPEUT_RS09870GCF_000154425#COPEUT_RS09870
HKClassicCurrent focus
42 815-44 524 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS09870The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1216688
Simplified PFAM architecture for HKOC_1216688
PFAM domain coverage: 228 / 569 aa (40.1%)
1 aa569 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[215-267] | HisKA[280-344] | HATPase_c[394-503]
- Domain count: 3
- Matched identifier: HKOC_1216688
- Positioned domains: HAMP 215-267 ; HisKA 280-344 ; HATPase_c 394-503
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS09870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key