1 HisKA#1
203-268 aa · 66 aa · 11.4% of protein
Raw token
HisKA:203:6.43e-20:268:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS09345
Histidine kinase, Hybrid
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeHybridLength581 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS09345Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage298 / 581 aa (51.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
315-430 aa · 116 aa · 20.0% of protein
Raw token
HATPase_c:315:1.43e-30:430:116:1093 Response_reg#3
461-576 aa · 116 aa · 20.0% of protein
Raw token
Response_reg:461:3.2e-23:576:116:111- Raw architecture: HisKA:203:6.43e-20:268:66:64#HATPase_c:315:1.43e-30:430:116:109#Response_reg:461:3.2e-23:576:116:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483533.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span19348-21093Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00999RefSeq proteinWP_044998235.1
Context group ID
GCF_000154425::NZ_DS483533.1::G00009Context members
COPEUT_RS09345
Partner locus tags
COPEUT_RS09345
Partner old locus tags
COPEUT_00999
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044998235.1Primary protein accession used for annex mappings.
UniProt accessionA0A412IUR2Primary UniProt accession resolved in the annex database.
UniProt IDA0A412IUR2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS09345Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00999Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483533.1Sequence record reported by the local genomic context database.
Genomic interval19 348-21 093 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 348-21 093 ntGCF_000154425::NZ_DS483533.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483533.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483533.1All displayed genes belong to this local TCS context.
Neighborhood span19 348-21 093 nt1 746 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 348 nt21 093 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS09345GCF_000154425#COPEUT_RS09345
HKHybridCurrent focus
19 348-21 093 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS09345The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1156620
Simplified PFAM architecture for HKOC_1156620
PFAM domain coverage: 297 / 581 aa (51.1%)
1 aa581 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[203-268] | HATPase_c[315-430] | Response_reg[461-575]
- Domain count: 3
- Matched identifier: HKOC_1156620
- Positioned domains: HisKA 203-268 ; HATPase_c 315-430 ; Response_reg 461-575
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS09345
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key