1 GAF#1
21-161 aa · 141 aa · 16.4% of protein
Raw token
GAF:21:0.00000115:161:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS08510
Histidine kinase, Hybrid
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeHybridLength858 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS08510Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length858 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage442 / 858 aa (51.5%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa858 aa
Domain-by-domain annotation4 items
2 HisKA#2
481-547 aa · 67 aa · 7.8% of protein
Raw token
HisKA:481:0.0000000000000998:547:67:643 HATPase_c#3
594-711 aa · 118 aa · 13.8% of protein
Raw token
HATPase_c:594:1.44e-27:711:119:1094 Response_reg#4
739-854 aa · 116 aa · 13.5% of protein
Raw token
Response_reg:739:9.74e-23:854:116:111- Raw architecture: GAF:21:0.00000115:161:141:133#HisKA:481:0.0000000000000998:547:67:64#HATPase_c:594:1.44e-27:711:119:109#Response_reg:739:9.74e-23:854:116:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483532.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span431893-434469Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00817RefSeq proteinWP_155803869.1
Context group ID
GCF_000154425::NZ_DS483532.1::G00019Context members
COPEUT_RS08510
Partner locus tags
COPEUT_RS08510
Partner old locus tags
COPEUT_00817
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_155803869.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS08510Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00817Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483532.1Sequence record reported by the local genomic context database.
Genomic interval431 893-434 469 nt2 577 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span431 893-434 469 ntGCF_000154425::NZ_DS483532.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483532.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483532.1All displayed genes belong to this local TCS context.
Neighborhood span431 893-434 469 nt2 577 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
431 893 nt434 469 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS08510GCF_000154425#COPEUT_RS08510
HKHybridCurrent focus
431 893-434 469 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS08510The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0474369
Simplified PFAM architecture for HKOC_0474369
PFAM domain coverage: 299 / 858 aa (34.8%)
1 aa858 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[481-547] | HATPase_c[595-710] | Response_reg[739-854]
- Domain count: 3
- Matched identifier: HKOC_0474369
- Positioned domains: HisKA 481-547 ; HATPase_c 595-710 ; Response_reg 739-854
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS08510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key