1 PAS_3#1
499-556 aa · 58 aa · 4.5% of protein
Raw token
PAS_3:499:0.000000054:556:61:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS08490
Histidine kinase, Hybrid
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeHybridLength1297 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS08490Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
PAS_3GGDEFHisKAHATPase_cResponse_reg
Protein length1297 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage511 / 1297 aa (39.4%)Merged over positioned domains only.
Domain description1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1297 aa
Domain-by-domain annotation5 items
2 GGDEF#2
576-725 aa · 150 aa · 11.6% of protein
Raw token
GGDEF:576:0.0000000189:725:162:1603 HisKA#3
922-988 aa · 67 aa · 5.2% of protein
Raw token
HisKA:922:6.69e-17:988:67:644 HATPase_c#4
1034-1151 aa · 118 aa · 9.1% of protein
Raw token
HATPase_c:1034:3.03e-29:1151:118:1095 Response_reg#5
1173-1290 aa · 118 aa · 9.1% of protein
Raw token
Response_reg:1173:5.72e-31:1290:118:111- Raw architecture: PAS_3:499:0.000000054:556:61:89#GGDEF:576:0.0000000189:725:162:160#HisKA:922:6.69e-17:988:67:64#HATPase_c:1034:3.03e-29:1151:118:109#Response_reg:1173:5.72e-31:1290:118:111
- Domain description: 1 PAS_3,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483532.1::G00017
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span422725-428555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00812RefSeq proteinWP_004852085.1
Context group ID
GCF_000154425::NZ_DS483532.1::G00017Context members
COPEUT_RS08485COPEUT_RS08490
Partner locus tags
COPEUT_RS08485COPEUT_RS08490
Partner old locus tags
COPEUT_00811COPEUT_00812
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004852085.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS08490Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00812Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483532.1Sequence record reported by the local genomic context database.
Genomic interval424 662-428 555 nt3 894 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span422 725-428 555 ntGCF_000154425::NZ_DS483532.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483532.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483532.1All displayed genes belong to this local TCS context.
Neighborhood span422 725-428 555 nt5 831 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
422 725 nt428 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS08485GCF_000154425#COPEUT_RS08485
HKHybrid
422 725-424 596 nt · Reverse (-)
COPEUT_RS08490GCF_000154425#COPEUT_RS08490
HKHybridCurrent focus
424 662-428 555 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS08490The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0124921
Simplified PFAM architecture for HKOC_0124921
PFAM domain coverage: 434 / 1297 aa (33.5%)
1 aa1297 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[593-725] | HisKA[922-988] | HATPase_c[1034-1150] | Response_reg[1173-1289]
- Domain count: 4
- Matched identifier: HKOC_0124921
- Positioned domains: GGDEF 593-725 ; HisKA 922-988 ; HATPase_c 1034-1150 ; Response_reg 1173-1289
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS08490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key