1 HisKA#1
249-315 aa · 67 aa · 10.8% of protein
Raw token
HisKA:249:1.08e-17:315:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS08485
Histidine kinase, Hybrid
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeHybridLength623 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS08485Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length623 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage295 / 623 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa623 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
362-475 aa · 114 aa · 18.3% of protein
Raw token
HATPase_c:362:1.65e-29:475:114:1093 Response_reg#3
503-616 aa · 114 aa · 18.3% of protein
Raw token
Response_reg:503:1.34e-29:616:114:111- Raw architecture: HisKA:249:1.08e-17:315:67:64#HATPase_c:362:1.65e-29:475:114:109#Response_reg:503:1.34e-29:616:114:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483532.1::G00017
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span422725-428555Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00811RefSeq proteinWP_004852082.1
Context group ID
GCF_000154425::NZ_DS483532.1::G00017Context members
COPEUT_RS08485COPEUT_RS08490
Partner locus tags
COPEUT_RS08485COPEUT_RS08490
Partner old locus tags
COPEUT_00811COPEUT_00812
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004852082.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS08485Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00811Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483532.1Sequence record reported by the local genomic context database.
Genomic interval422 725-424 596 nt1 872 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span422 725-428 555 ntGCF_000154425::NZ_DS483532.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483532.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483532.1All displayed genes belong to this local TCS context.
Neighborhood span422 725-428 555 nt5 831 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
422 725 nt428 555 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS08485GCF_000154425#COPEUT_RS08485
HKHybridCurrent focus
422 725-424 596 nt · Reverse (-)
COPEUT_RS08490GCF_000154425#COPEUT_RS08490
HKHybrid
424 662-428 555 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS08485The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0964021
Simplified PFAM architecture for HKOC_0964021
PFAM domain coverage: 297 / 623 aa (47.7%)
1 aa623 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[250-315] | HATPase_c[362-477] | Response_reg[503-617]
- Domain count: 3
- Matched identifier: HKOC_0964021
- Positioned domains: HisKA 250-315 ; HATPase_c 362-477 ; Response_reg 503-617
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS08485
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key