1 HAMP#1
188-256 aa · 69 aa · 13.2% of protein
Raw token
HAMP:188:0.000000000000904:256:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS08205
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength523 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS08205Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length523 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 523 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa523 aa
Domain-by-domain annotation3 items
2 HisKA#2
261-325 aa · 65 aa · 12.4% of protein
Raw token
HisKA:261:0.0000000000000346:325:65:643 HATPase_c#3
372-484 aa · 113 aa · 21.6% of protein
Raw token
HATPase_c:372:1.73e-34:484:113:109- Raw architecture: HAMP:188:0.000000000000904:256:69:69#HisKA:261:0.0000000000000346:325:65:64#HATPase_c:372:1.73e-34:484:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483532.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span359904-362212Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00743RefSeq proteinWP_227909671.1
Context group ID
GCF_000154425::NZ_DS483532.1::G00016Context members
COPEUT_RS08200COPEUT_RS08205
Partner locus tags
COPEUT_RS08200COPEUT_RS08205
Partner old locus tags
COPEUT_00742COPEUT_00743
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227909671.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS08205Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00743Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483532.1Sequence record reported by the local genomic context database.
Genomic interval360 641-362 212 nt1 572 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span359 904-362 212 ntGCF_000154425::NZ_DS483532.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483532.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483532.1All displayed genes belong to this local TCS context.
Neighborhood span359 904-362 212 nt2 309 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
359 904 nt362 212 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS08200GCF_000154425#COPEUT_RS08200
RROmpR
359 904-360 641 nt · Forward (+)
COPEUT_RS08205GCF_000154425#COPEUT_RS08205
HKClassicCurrent focus
360 641-362 212 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS08205The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1379995
Simplified PFAM architecture for HKOC_1379995
PFAM domain coverage: 227 / 523 aa (43.4%)
1 aa523 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[204-255] | HisKA[261-324] | HATPase_c[373-483]
- Domain count: 3
- Matched identifier: HKOC_1379995
- Positioned domains: HAMP 204-255 ; HisKA 261-324 ; HATPase_c 373-483
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS08205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key