1 HisKA#1
137-203 aa · 67 aa · 18.1% of protein
Raw token
HisKA:137:0.00000000000349:203:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS07745
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength370 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS07745Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length370 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 370 aa (50.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa370 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
248-365 aa · 118 aa · 31.9% of protein
Raw token
HATPase_c:248:9.11e-26:365:118:109- Raw architecture: HisKA:137:0.00000000000349:203:67:64#HATPase_c:248:9.11e-26:365:118:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483532.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span259453-261265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00637RefSeq proteinWP_227909667.1
Context group ID
GCF_000154425::NZ_DS483532.1::G00014Context members
COPEUT_RS07740COPEUT_RS07745
Partner locus tags
COPEUT_RS07740COPEUT_RS07745
Partner old locus tags
COPEUT_00636COPEUT_00637
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_227909667.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS07745Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00637Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483532.1Sequence record reported by the local genomic context database.
Genomic interval260 153-261 265 nt1 113 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span259 453-261 265 ntGCF_000154425::NZ_DS483532.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483532.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483532.1All displayed genes belong to this local TCS context.
Neighborhood span259 453-261 265 nt1 813 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
259 453 nt261 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS07740GCF_000154425#COPEUT_RS07740
RROmpR
259 453-260 163 nt · Reverse (-)
COPEUT_RS07745GCF_000154425#COPEUT_RS07745
HKClassicCurrent focus
260 153-261 265 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS07745The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2682660
Simplified PFAM architecture for HKOC_2682660
PFAM domain coverage: 284 / 370 aa (76.8%)
1 aa370 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[26-127] | HisKA[138-203] | HATPase_c[249-364]
- Domain count: 3
- Matched identifier: HKOC_2682660
- Positioned domains: DUF4118 26-127 ; HisKA 138-203 ; HATPase_c 249-364
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS07745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key