1 HAMP#1
282-355 aa · 74 aa · 13.0% of protein
Raw token
HAMP:282:0.0000000000219:355:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS07280
Histidine kinase, Classic
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeClassicLength570 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000154425#COPEUT_RS07280Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length570 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 570 aa (44.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa570 aa
Domain-by-domain annotation3 items
2 His_kinase#2
371-449 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:371:1.18e-28:449:79:803 HATPase_c#3
465-567 aa · 103 aa · 18.1% of protein
Raw token
HATPase_c:465:0.00000000000000269:567:112:109- Raw architecture: HAMP:282:0.0000000000219:355:74:69#His_kinase:371:1.18e-28:449:79:80#HATPase_c:465:0.00000000000000269:567:112:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000154425::NZ_DS483532.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154359-157647Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00537RefSeq proteinWP_004851569.1
Context group ID
GCF_000154425::NZ_DS483532.1::G00013Context members
COPEUT_RS07280COPEUT_RS07285
Partner locus tags
COPEUT_RS07280COPEUT_RS07285
Partner old locus tags
COPEUT_00537COPEUT_00538
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004851569.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS07280Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00537Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483532.1Sequence record reported by the local genomic context database.
Genomic interval154 359-156 071 nt1 713 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span154 359-157 647 ntGCF_000154425::NZ_DS483532.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483532.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483532.1All displayed genes belong to this local TCS context.
Neighborhood span154 359-157 647 nt3 289 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 359 nt157 647 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
COPEUT_RS07280GCF_000154425#COPEUT_RS07280
HKClassicCurrent focus
154 359-156 071 nt · Reverse (-)
COPEUT_RS07285GCF_000154425#COPEUT_RS07285
RRunclassified
156 130-157 647 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS07280The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1211856
Simplified PFAM architecture for HKOC_1211856
PFAM domain coverage: 228 / 570 aa (40.0%)
1 aa570 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[307-354] | His_kinase[371-446] | HATPase_c[464-567]
- Domain count: 3
- Matched identifier: HKOC_1211856
- Positioned domains: HAMP 307-354 ; His_kinase 371-446 ; HATPase_c 464-567
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS07280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key