1 CHASE#1
146-228 aa · 83 aa · 11.4% of protein
Raw token
CHASE:146:0.00000000000000914:228:93:183P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
COPEUT_RS05190
Histidine kinase, Hybrid
Coprococcus eutactus ATCC 27759 · GCF_000154425
ClassHKTypeHybridLength726 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000154425#COPEUT_RS05190Stable P2CS identifier used across views.
GenomeGCF_000154425Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
CHASEHisKAHATPase_cResponse_reg
Protein length726 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage380 / 726 aa (52.3%)Merged over positioned domains only.
Domain description1 CHASE,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa726 aa
Domain-by-domain annotation4 items
2 HisKA#2
343-409 aa · 67 aa · 9.2% of protein
Raw token
HisKA:343:9.36e-18:409:67:643 HATPase_c#3
456-569 aa · 114 aa · 15.7% of protein
Raw token
HATPase_c:456:2.03e-29:569:114:1094 Response_reg#4
599-714 aa · 116 aa · 16.0% of protein
Raw token
Response_reg:599:5.32e-27:714:116:111- Raw architecture: CHASE:146:0.00000000000000914:228:93:183#HisKA:343:9.36e-18:409:67:64#HATPase_c:456:2.03e-29:569:114:109#Response_reg:599:5.32e-27:714:116:111
- Domain description: 1 CHASE,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000154425::NZ_DS483527.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span79843-82023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCOPEUT_00085RefSeq proteinWP_004850705.1
Context group ID
GCF_000154425::NZ_DS483527.1::G00026Context members
COPEUT_RS05190
Partner locus tags
COPEUT_RS05190
Partner old locus tags
COPEUT_00085
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_004850705.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCOPEUT_RS05190Primary locus identifier stored in the genes table.
Old locus tagCOPEUT_00085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_DS483527.1Sequence record reported by the local genomic context database.
Genomic interval79 843-82 023 nt2 181 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span79 843-82 023 ntGCF_000154425::NZ_DS483527.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000154425::NZ_DS483527.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_DS483527.1All displayed genes belong to this local TCS context.
Neighborhood span79 843-82 023 nt2 181 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
79 843 nt82 023 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
COPEUT_RS05190GCF_000154425#COPEUT_RS05190
HKHybridCurrent focus
79 843-82 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154425#COPEUT_RS05190The current gene is the representative for this cluster.
PFAM architectureCHASE + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0720777
Simplified PFAM architecture for HKOC_0720777
PFAM domain coverage: 383 / 726 aa (52.8%)
1 aa726 aa
CHASEHisKAHATPase_cResponse_reg
- Simplified architecture: CHASE + HisKA + HATPase_c + Response_reg
- Raw architecture: CHASE[143-229] | HisKA[343-409] | HATPase_c[456-570] | Response_reg[599-712]
- Domain count: 4
- Matched identifier: HKOC_0720777
- Positioned domains: CHASE 143-229 ; HisKA 343-409 ; HATPase_c 456-570 ; Response_reg 599-712
Cluster members and taxonomy
Representative gene: GCF_000154425#COPEUT_RS05190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 411 474 · GCF_000154425
AssemblyASM15442v1 · Scaffoldhaploid
Genome composition3 102 987 bp · 43,0% GCCoprococcus eutactus ATCC 27759
Signal transduction countsGenes 82 · HK 42 · RR 38CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key